1 SBP_bac_3#1
59-279 aa · 221 aa · 33.2% of protein
Raw token
SBP_bac_3:59:1.7e-41:279:230:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWF04_RS08220
Histidine kinase, Classic
Clostridioides difficile · GCF_021284265
ClassHKTypeClassicLength665 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021284265#LWF04_RS08220Stable P2CS identifier used across views.
GenomeGCF_021284265Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length665 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage386 / 665 aa (58.0%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa665 aa
Domain-by-domain annotation3 items
2 HisKA#2
447-509 aa · 63 aa · 9.5% of protein
Raw token
HisKA:447:0.0000000000000444:509:63:643 HATPase_c#3
558-659 aa · 102 aa · 15.3% of protein
Raw token
HATPase_c:558:2.52e-23:659:103:109- Raw architecture: SBP_bac_3:59:1.7e-41:279:230:224#HisKA:447:0.0000000000000444:509:63:64#HATPase_c:558:2.52e-23:659:103:109
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021284265::NZ_JAJSNM010000152.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-3320Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWF04_08205RefSeq proteinWP_232867515.1
Context group ID
GCF_021284265::NZ_JAJSNM010000152.1::G00054Context members
LWF04_RS08220LWF04_RS08225
Partner locus tags
LWF04_RS08220LWF04_RS08225
Partner old locus tags
LWF04_08205LWF04_08210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232867515.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWF04_RS08220Primary locus identifier stored in the genes table.
Old locus tagLWF04_08205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNM010000152.1Sequence record reported by the local genomic context database.
Genomic interval1-1 998 nt1 998 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-3 320 ntGCF_021284265::NZ_JAJSNM010000152.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284265::NZ_JAJSNM010000152.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNM010000152.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 320 nt3 320 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 320 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LWF04_RS08220GCF_021284265#LWF04_RS08220
HKClassicCurrent focus
1-1 998 nt · Forward (+)
LWF04_RS08225GCF_021284265#LWF04_RS08225
RRNtrC
1 998-3 320 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_021284575#LWE98_RS15750Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0843923
Simplified PFAM architecture for HKOC_0843923
PFAM domain coverage: 385 / 671 aa (57.4%)
1 aa671 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[67-284] | HisKA[455-516] | HATPase_c[562-666]
- Domain count: 3
- Matched identifier: HKOC_0843923
- Positioned domains: SBP_bac_3 67-284 ; HisKA 455-516 ; HATPase_c 562-666
Cluster members and taxonomy
Representative gene: GCF_021284575#LWE98_RS15750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284265
AssemblyASM2128426v1 · Contighaploid
Genome composition4 165 160 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key