1 HisKA#1
191-256 aa · 66 aa · 16.0% of protein
Raw token
HisKA:191:0.0000000143:256:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE70_RS05490
Histidine kinase, Classic
Clostridioides difficile · GCF_021284195
ClassHKTypeClassicLength413 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021284195#LWE70_RS05490Stable P2CS identifier used across views.
GenomeGCF_021284195Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length413 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 413 aa (41.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa413 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
307-410 aa · 104 aa · 25.2% of protein
Raw token
HATPase_c:307:8.84e-30:410:104:109- Raw architecture: HisKA:191:0.0000000143:256:66:64#HATPase_c:307:8.84e-30:410:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021284195::NZ_JAJSOD010000032.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17502-19473Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE70_05475RefSeq proteinWP_232879657.1
Context group ID
GCF_021284195::NZ_JAJSOD010000032.1::G00054Context members
LWE70_RS05490LWE70_RS05495
Partner locus tags
LWE70_RS05490LWE70_RS05495
Partner old locus tags
LWE70_05475LWE70_05480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232879657.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE70_RS05490Primary locus identifier stored in the genes table.
Old locus tagLWE70_05475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSOD010000032.1Sequence record reported by the local genomic context database.
Genomic interval17 502-18 743 nt1 242 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 502-19 473 ntGCF_021284195::NZ_JAJSOD010000032.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284195::NZ_JAJSOD010000032.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSOD010000032.1All displayed genes belong to this local TCS context.
Neighborhood span17 502-19 473 nt1 972 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 502 nt19 473 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LWE70_RS05490GCF_021284195#LWE70_RS05490
HKClassicCurrent focus
17 502-18 743 nt · Forward (+)
LWE70_RS05495GCF_021284195#LWE70_RS05495
RROmpR
18 793-19 473 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015732535#CDIF101085_RS19295Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2330845
Simplified PFAM architecture for HKOC_2330845
PFAM domain coverage: 170 / 413 aa (41.2%)
1 aa413 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[192-256] | HATPase_c[305-409]
- Domain count: 2
- Matched identifier: HKOC_2330845
- Positioned domains: HisKA 192-256 ; HATPase_c 305-409
Cluster members and taxonomy
Representative gene: GCF_015732535#CDIF101085_RS19295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284195
AssemblyASM2128419v1 · Contighaploid
Genome composition3 956 786 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key