1 HisKA#1
191-256 aa · 66 aa · 16.0% of protein
Raw token
HisKA:191:0.0000000143:256:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF101085_RS19295
Histidine kinase, Classic
Clostridioides difficile · GCF_015732535
ClassHKTypeClassicLength413 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015732535#CDIF101085_RS19295Stable P2CS identifier used across views.
GenomeGCF_015732535Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length413 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 413 aa (41.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa413 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
307-410 aa · 104 aa · 25.2% of protein
Raw token
HATPase_c:307:8.84e-30:410:104:109- Raw architecture: HisKA:191:0.0000000143:256:66:64#HATPase_c:307:8.84e-30:410:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015732535::NZ_CP021319.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3601323-3603294Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015732535::NZ_CP021319.1::G00053Context members
CDIF101085_RS16725CDIF101085_RS19295
Partner locus tags
CDIF101085_RS16725CDIF101085_RS19295
Partner old locus tags
CDIF101085_03449
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232879657.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF101085_RS19295Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP021319.1Sequence record reported by the local genomic context database.
Genomic interval3 602 053-3 603 294 nt1 242 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 601 323-3 603 294 ntGCF_015732535::NZ_CP021319.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015732535::NZ_CP021319.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021319.1All displayed genes belong to this local TCS context.
Neighborhood span3 601 323-3 603 294 nt1 972 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 601 323 nt3 603 294 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF101085_RS16725GCF_015732535#CDIF101085_RS16725
RROmpR
3 601 323-3 602 003 nt · Reverse (-)
CDIF101085_RS19295GCF_015732535#CDIF101085_RS19295
HKClassicCurrent focus
3 602 053-3 603 294 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015732535#CDIF101085_RS19295The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2330845
Simplified PFAM architecture for HKOC_2330845
PFAM domain coverage: 170 / 413 aa (41.2%)
1 aa413 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[192-256] | HATPase_c[305-409]
- Domain count: 2
- Matched identifier: HKOC_2330845
- Positioned domains: HisKA 192-256 ; HATPase_c 305-409
Cluster members and taxonomy
Representative gene: GCF_015732535#CDIF101085_RS19295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_015732535
AssemblyASM1573253v1 · Complete Genomehaploid
Genome composition4 045 635 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key