1 SBP_bac_3#1
70-290 aa · 221 aa · 32.7% of protein
Raw token
SBP_bac_3:70:2.26e-41:290:230:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE77_RS13090
Histidine kinase, Classic
Clostridioides difficile · GCF_021284165
ClassHKTypeClassicLength676 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021284165#LWE77_RS13090Stable P2CS identifier used across views.
GenomeGCF_021284165Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length676 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage386 / 676 aa (57.1%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa676 aa
Domain-by-domain annotation3 items
2 HisKA#2
458-520 aa · 63 aa · 9.3% of protein
Raw token
HisKA:458:0.000000000000033:520:63:643 HATPase_c#3
569-670 aa · 102 aa · 15.1% of protein
Raw token
HATPase_c:569:4.02e-23:670:104:109- Raw architecture: SBP_bac_3:70:2.26e-41:290:230:224#HisKA:458:0.000000000000033:520:63:64#HATPase_c:569:4.02e-23:670:104:109
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021284165::NZ_JAJSNJ010000413.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-3353Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE77_13080RefSeq proteinWP_232917920.1
Context group ID
GCF_021284165::NZ_JAJSNJ010000413.1::G00029Context members
LWE77_RS13090LWE77_RS13095
Partner locus tags
LWE77_RS13090LWE77_RS13095
Partner old locus tags
LWE77_13080LWE77_13085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232917920.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE77_RS13090Primary locus identifier stored in the genes table.
Old locus tagLWE77_13080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNJ010000413.1Sequence record reported by the local genomic context database.
Genomic interval1-2 031 nt2 031 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-3 353 ntGCF_021284165::NZ_JAJSNJ010000413.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284165::NZ_JAJSNJ010000413.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNJ010000413.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 353 nt3 353 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 353 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LWE77_RS13090GCF_021284165#LWE77_RS13090
HKClassicCurrent focus
1-2 031 nt · Forward (+)
LWE77_RS13095GCF_021284165#LWE77_RS13095
RRNtrC
2 031-3 353 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_021284165#LWE77_RS13090The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0829264
Simplified PFAM architecture for HKOC_0829264
PFAM domain coverage: 385 / 676 aa (57.0%)
1 aa676 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[72-289] | HisKA[460-521] | HATPase_c[567-671]
- Domain count: 3
- Matched identifier: HKOC_0829264
- Positioned domains: SBP_bac_3 72-289 ; HisKA 460-521 ; HATPase_c 567-671
Cluster members and taxonomy
Representative gene: GCF_021284165#LWE77_RS13090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284165
AssemblyASM2128416v1 · Contighaploid
Genome composition4 102 212 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 43 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key