1 HisKA_3#1
117-182 aa · 66 aa · 20.9% of protein
Raw token
HisKA_3:117:2.63e-21:182:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE71_RS16535
Histidine kinase, Classic
Clostridioides difficile · GCF_021283685
ClassHKTypeClassicLength316 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021283685#LWE71_RS16535Stable P2CS identifier used across views.
GenomeGCF_021283685Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length316 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 316 aa (47.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
223-307 aa · 85 aa · 26.9% of protein
Raw token
HATPase_c:223:0.000000000772:307:104:109- Raw architecture: HisKA_3:117:2.63e-21:182:67:68#HATPase_c:223:0.000000000772:307:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021283685::NZ_JAJSMQ010000624.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51-1643Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE71_16560RefSeq proteinWP_232922736.1
Context group ID
GCF_021283685::NZ_JAJSMQ010000624.1::G00027Context members
LWE71_RS16530LWE71_RS16535
Partner locus tags
LWE71_RS16530LWE71_RS16535
Partner old locus tags
LWE71_16555LWE71_16560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232922736.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE71_RS16535Primary locus identifier stored in the genes table.
Old locus tagLWE71_16560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSMQ010000624.1Sequence record reported by the local genomic context database.
Genomic interval691-1 643 nt953 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51-1 643 ntGCF_021283685::NZ_JAJSMQ010000624.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021283685::NZ_JAJSMQ010000624.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSMQ010000624.1All displayed genes belong to this local TCS context.
Neighborhood span51-1 643 nt1 593 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 nt1 643 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LWE71_RS16530GCF_021283685#LWE71_RS16530
RRNarL
51-698 nt · Reverse (-)
LWE71_RS16535GCF_021283685#LWE71_RS16535
HKClassicCurrent focus
691-1 643 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0206215Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2550121
Simplified PFAM architecture for HKOC_2550121
PFAM domain coverage: 150 / 387 aa (38.8%)
1 aa387 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[188-252] | HATPase_c[294-378]
- Domain count: 2
- Matched identifier: HKOC_2550121
- Positioned domains: HisKA_3 188-252 ; HATPase_c 294-378
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0206215
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 307 total members. Page 1 / 7.
GCF_000155065#QAE_RS0206215 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021283685
AssemblyASM2128368v1 · Contighaploid
Genome composition3 837 771 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 46 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key