1 His_kinase#1
305-376 aa · 72 aa · 14.4% of protein
Raw token
His_kinase:305:2.15e-24:376:72:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWF03_RS10520
Histidine kinase, Classic
Clostridioides difficile · GCF_021283665
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021283665#LWF03_RS10520Stable P2CS identifier used across views.
GenomeGCF_021283665Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 501 aa (33.9%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
396-493 aa · 98 aa · 19.6% of protein
Raw token
HATPase_c:396:0.00000291:493:104:109- Raw architecture: His_kinase:305:2.15e-24:376:72:80#HATPase_c:396:0.00000291:493:104:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021283665::NZ_JAJSOE010000093.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12137-14454Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWF03_10520RefSeq proteinWP_003422776.1
Context group ID
GCF_021283665::NZ_JAJSOE010000093.1::G00010Context members
LWF03_RS10520LWF03_RS10525
Partner locus tags
LWF03_RS10520LWF03_RS10525
Partner old locus tags
LWF03_10520LWF03_10525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003422776.1Primary protein accession used for annex mappings.
UniProt accessionD5Q8R1Primary UniProt accession resolved in the annex database.
UniProt IDD5Q8R1_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWF03_RS10520Primary locus identifier stored in the genes table.
Old locus tagLWF03_10520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSOE010000093.1Sequence record reported by the local genomic context database.
Genomic interval12 137-13 642 nt1 506 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 137-14 454 ntGCF_021283665::NZ_JAJSOE010000093.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021283665::NZ_JAJSOE010000093.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSOE010000093.1All displayed genes belong to this local TCS context.
Neighborhood span12 137-14 454 nt2 318 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 137 nt14 454 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LWF03_RS10520GCF_021283665#LWF03_RS10520
HKClassicCurrent focus
12 137-13 642 nt · Forward (+)
LWF03_RS10525GCF_021283665#LWF03_RS10525
RRunclassified
13 756-14 454 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164175#HMPREF0220_RS10235Use this link to inspect the representative gene detail.
PFAM architectureCupin_2 + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1468240
Simplified PFAM architecture for HKOC_1468240
PFAM domain coverage: 139 / 501 aa (27.7%)
1 aa501 aa
Cupin_2His_kinase
- Simplified architecture: Cupin_2 + His_kinase
- Raw architecture: Cupin_2[34-98] | His_kinase[303-376]
- Domain count: 2
- Matched identifier: HKOC_1468240
- Positioned domains: Cupin_2 34-98 ; His_kinase 303-376
Cluster members and taxonomy
Representative gene: GCF_000164175#HMPREF0220_RS10235
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 281 total members. Page 1 / 6.
GCF_000164175#HMPREF0220_RS10235 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021283665
AssemblyASM2128366v1 · Contighaploid
Genome composition3 907 427 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 47 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key