1 His_kinase#1
305-376 aa · 72 aa · 14.4% of protein
Raw token
His_kinase:305:2.15e-24:376:72:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMW55_RS09115
Histidine kinase, Classic
Clostridioides difficile · GCF_016767035
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016767035#JMW55_RS09115Stable P2CS identifier used across views.
GenomeGCF_016767035Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 501 aa (33.9%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
396-493 aa · 98 aa · 19.6% of protein
Raw token
HATPase_c:396:0.00000291:493:104:109- Raw architecture: His_kinase:305:2.15e-24:376:72:80#HATPase_c:396:0.00000291:493:104:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016767035::NZ_CP068560.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1986687-1989004Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJMW55_09115RefSeq proteinWP_003422776.1
Context group ID
GCF_016767035::NZ_CP068560.1::G00027Context members
JMW55_RS09115JMW55_RS09120
Partner locus tags
JMW55_RS09115JMW55_RS09120
Partner old locus tags
JMW55_09115JMW55_09120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003422776.1Primary protein accession used for annex mappings.
UniProt accessionD5Q8R1Primary UniProt accession resolved in the annex database.
UniProt IDD5Q8R1_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMW55_RS09115Primary locus identifier stored in the genes table.
Old locus tagJMW55_09115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP068560.1Sequence record reported by the local genomic context database.
Genomic interval1 986 687-1 988 192 nt1 506 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 986 687-1 989 004 ntGCF_016767035::NZ_CP068560.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016767035::NZ_CP068560.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068560.1All displayed genes belong to this local TCS context.
Neighborhood span1 986 687-1 989 004 nt2 318 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 986 687 nt1 989 004 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JMW55_RS09115GCF_016767035#JMW55_RS09115
HKClassicCurrent focus
1 986 687-1 988 192 nt · Forward (+)
JMW55_RS09120GCF_016767035#JMW55_RS09120
RRunclassified
1 988 306-1 989 004 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164175#HMPREF0220_RS10235Use this link to inspect the representative gene detail.
PFAM architectureCupin_2 + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1468240
Simplified PFAM architecture for HKOC_1468240
PFAM domain coverage: 139 / 501 aa (27.7%)
1 aa501 aa
Cupin_2His_kinase
- Simplified architecture: Cupin_2 + His_kinase
- Raw architecture: Cupin_2[34-98] | His_kinase[303-376]
- Domain count: 2
- Matched identifier: HKOC_1468240
- Positioned domains: Cupin_2 34-98 ; His_kinase 303-376
Cluster members and taxonomy
Representative gene: GCF_000164175#HMPREF0220_RS10235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016767035
AssemblyASM1676703v1 · Complete Genomehaploid
Genome composition3 951 345 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key