1 Response_reg#1
5-109 aa · 105 aa · 43.6% of protein
Raw token
Response_reg:5:1.09e-28:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE91_RS08615
Response regulator OmpR family
Clostridioides difficile · GCF_021283625
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021283625#LWE91_RS08615Stable P2CS identifier used across views.
GenomeGCF_021283625Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 241 aa (75.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-236 aa · 77 aa · 32.0% of protein
Raw token
Trans_reg_C:160:4.3e-32:236:77:77- Raw architecture: Response_reg:5:1.09e-28:109:106:111#Trans_reg_C:160:4.3e-32:236:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021283625::NZ_JAJSNB010000097.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2970-5102Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE91_08615RefSeq proteinWP_003420352.1
Context group ID
GCF_021283625::NZ_JAJSNB010000097.1::G00034Context members
LWE91_RS08615LWE91_RS08620
Partner locus tags
LWE91_RS08615LWE91_RS08620
Partner old locus tags
LWE91_08615LWE91_08620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003420352.1Primary protein accession used for annex mappings.
UniProt accessionD5Q6Z0Primary UniProt accession resolved in the annex database.
UniProt IDD5Q6Z0_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE91_RS08615Primary locus identifier stored in the genes table.
Old locus tagLWE91_08615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNB010000097.1Sequence record reported by the local genomic context database.
Genomic interval2 970-3 695 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 970-5 102 ntGCF_021283625::NZ_JAJSNB010000097.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021283625::NZ_JAJSNB010000097.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNB010000097.1All displayed genes belong to this local TCS context.
Neighborhood span2 970-5 102 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 970 nt5 102 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LWE91_RS08615GCF_021283625#LWE91_RS08615
RROmpRCurrent focus
2 970-3 695 nt · Forward (+)
LWE91_RS08620GCF_021283625#LWE91_RS08620
HKClassic
3 699-5 102 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0208275Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862784
Simplified PFAM architecture for RROC_0862784
PFAM domain coverage: 184 / 241 aa (76.3%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[160-236]
- Domain count: 2
- Matched identifier: RROC_0862784
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 160-236 ; Trans_reg_C 160-236
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0208275
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 313 total members. Page 1 / 7.
GCF_000155065#QAE_RS0208275 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021283625
AssemblyASM2128362v1 · Contighaploid
Genome composition3 919 288 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 94 · HK 46 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key