1 HisKA_3#1
227-289 aa · 63 aa · 7.1% of protein
Raw token
HisKA_3:227:4.87e-18:289:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LLJ07_RS05580
Histidine kinase, Classic
Bifidobacterium bifidum · GCF_020861855
ClassHKTypeClassicLength882 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020861855#LLJ07_RS05580Stable P2CS identifier used across views.
GenomeGCF_020861855Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length882 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage229 / 882 aa (26.0%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa882 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
335-425 aa · 91 aa · 10.3% of protein
Raw token
HATPase_c:335:0.0000000000512:425:108:1093 HisKA_3#3
773-847 aa · 75 aa · 8.5% of protein
Raw token
HisKA_3:773:0.0000151:847:75:68- Raw architecture: HisKA_3:227:4.87e-18:289:63:68#HATPase_c:335:0.0000000000512:425:108:109#HisKA_3:773:0.0000151:847:75:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020861855::NZ_JAJHZI010000001.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1310384-1313886Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLLJ07_05565RefSeq proteinWP_226800899.1
Context group ID
GCF_020861855::NZ_JAJHZI010000001.1::G00009Context members
LLJ07_RS05580LLJ07_RS05585
Partner locus tags
LLJ07_RS05580LLJ07_RS05585
Partner old locus tags
LLJ07_05565LLJ07_05570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226800899.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLLJ07_RS05580Primary locus identifier stored in the genes table.
Old locus tagLLJ07_05565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJHZI010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 310 384-1 313 032 nt2 649 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 310 384-1 313 886 ntGCF_020861855::NZ_JAJHZI010000001.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020861855::NZ_JAJHZI010000001.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJHZI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 310 384-1 313 886 nt3 503 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 310 384 nt1 313 886 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LLJ07_RS05580GCF_020861855#LLJ07_RS05580
HKClassicCurrent focus
1 310 384-1 313 032 nt · Forward (+)
LLJ07_RS05585GCF_020861855#LLJ07_RS05585
RRNarL
1 313 140-1 313 886 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003790385#B5U84_RS04660Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0436635
Simplified PFAM architecture for HKOC_0436635
PFAM domain coverage: 407 / 885 aa (46.0%)
1 aa885 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[8-130] | HisKA_3[230-292] | HATPase_c[339-428] | DUF7134[567-697]
- Domain count: 4
- Matched identifier: HKOC_0436635
- Positioned domains: DUF7134 8-130 ; HisKA_3 230-292 ; HATPase_c 339-428 ; DUF7134 567-697
Cluster members and taxonomy
Representative gene: GCF_003790385#B5U84_RS04660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_020861855
AssemblyASM2086185v1 · Contighaploid
Genome composition2 288 004 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 30 · HK 13 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key