1 HisKA_3#1
230-292 aa · 63 aa · 7.1% of protein
Raw token
HisKA_3:230:4.62e-18:292:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5U84_RS04660
Histidine kinase, Classic
Bifidobacterium bifidum · GCF_003790385
ClassHKTypeClassicLength885 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003790385#B5U84_RS04660Stable P2CS identifier used across views.
GenomeGCF_003790385Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length885 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage229 / 885 aa (25.9%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa885 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
338-428 aa · 91 aa · 10.3% of protein
Raw token
HATPase_c:338:0.0000000000559:428:108:1093 HisKA_3#3
776-850 aa · 75 aa · 8.5% of protein
Raw token
HisKA_3:776:0.0000145:850:75:68- Raw architecture: HisKA_3:230:4.62e-18:292:63:68#HATPase_c:338:0.0000000000559:428:108:109#HisKA_3:776:0.0000145:850:75:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003790385::NZ_RJZG01000003.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span176491-180002Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5U84_04655RefSeq proteinWP_227760177.1
Context group ID
GCF_003790385::NZ_RJZG01000003.1::G00015Context members
B5U84_RS04655B5U84_RS04660
Partner locus tags
B5U84_RS04655B5U84_RS04660
Partner old locus tags
B5U84_04650B5U84_04655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227760177.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5U84_RS04660Primary locus identifier stored in the genes table.
Old locus tagB5U84_04655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RJZG01000003.1Sequence record reported by the local genomic context database.
Genomic interval177 345-180 002 nt2 658 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span176 491-180 002 ntGCF_003790385::NZ_RJZG01000003.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003790385::NZ_RJZG01000003.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RJZG01000003.1All displayed genes belong to this local TCS context.
Neighborhood span176 491-180 002 nt3 512 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
176 491 nt180 002 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B5U84_RS04655GCF_003790385#B5U84_RS04655
RRNarL
176 491-177 237 nt · Reverse (-)
B5U84_RS04660GCF_003790385#B5U84_RS04660
HKClassicCurrent focus
177 345-180 002 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003790385#B5U84_RS04660The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0436635
Simplified PFAM architecture for HKOC_0436635
PFAM domain coverage: 407 / 885 aa (46.0%)
1 aa885 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[8-130] | HisKA_3[230-292] | HATPase_c[339-428] | DUF7134[567-697]
- Domain count: 4
- Matched identifier: HKOC_0436635
- Positioned domains: DUF7134 8-130 ; HisKA_3 230-292 ; HATPase_c 339-428 ; DUF7134 567-697
Cluster members and taxonomy
Representative gene: GCF_003790385#B5U84_RS04660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_003790385
AssemblyASM379038v1 · Contighaploid
Genome composition2 281 719 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 30 · HK 13 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key