1 Response_reg#1
1-61 aa · 61 aa · 52.6% of protein
Raw token
Response_reg:1:5.48e-16:61:62:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS20490
Response regulator, CheY family
Terrisporobacter mayombei · GCF_020748465
ClassRRTypeCheYLength116 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020748465#K0039_RS20490Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length116 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage61 / 116 aa (52.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:5.48e-16:61:62:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020748465::NZ_JAHZMP010000089.1::G00053
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span187-537Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_20380RefSeq proteinWP_228106794.1
Context group ID
GCF_020748465::NZ_JAHZMP010000089.1::G00053Context members
K0039_RS20490
Partner locus tags
K0039_RS20490
Partner old locus tags
K0039_20380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_228106794.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS20490Primary locus identifier stored in the genes table.
Old locus tagK0039_20380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000089.1Sequence record reported by the local genomic context database.
Genomic interval187-537 nt351 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span187-537 ntGCF_020748465::NZ_JAHZMP010000089.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000089.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000089.1All displayed genes belong to this local TCS context.
Neighborhood span187-537 nt351 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
187 nt537 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K0039_RS20490GCF_020748465#K0039_RS20490
RRCheYCurrent focus
187-537 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164175#HMPREF0220_RS06710Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047529
Simplified PFAM architecture for RROC_1047529
PFAM domain coverage: 181 / 234 aa (77.4%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[159-230]
- Domain count: 2
- Matched identifier: RROC_1047529
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 159-230 ; Trans_reg_C 159-230
Cluster members and taxonomy
Representative gene: GCF_000164175#HMPREF0220_RS06710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key