1 PAS_3#1
206-277 aa · 72 aa · 12.5% of protein
Raw token
PAS_3:206:0.000000000574:277:76:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS01425
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength578 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020748465#K0039_RS01425Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_c
Protein length578 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 578 aa (43.6%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
317-386 aa · 70 aa · 12.1% of protein
Raw token
HisKA:317:0.00000000000000526:386:70:643 HATPase_c#3
435-544 aa · 110 aa · 19.0% of protein
Raw token
HATPase_c:435:4.52e-32:544:110:109- Raw architecture: PAS_3:206:0.000000000574:277:76:89#HisKA:317:0.00000000000000526:386:70:64#HATPase_c:435:4.52e-32:544:110:109
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020748465::NZ_JAHZMP010000001.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span285642-287378Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_01410RefSeq proteinWP_228103281.1
Context group ID
GCF_020748465::NZ_JAHZMP010000001.1::G00011Context members
K0039_RS01425
Partner locus tags
K0039_RS01425
Partner old locus tags
K0039_01410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228103281.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q108Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q108_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS01425Primary locus identifier stored in the genes table.
Old locus tagK0039_01410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000001.1Sequence record reported by the local genomic context database.
Genomic interval285 642-287 378 nt1 737 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span285 642-287 378 ntGCF_020748465::NZ_JAHZMP010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span285 642-287 378 nt1 737 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
285 642 nt287 378 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K0039_RS01425GCF_020748465#K0039_RS01425
HKClassicCurrent focus
285 642-287 378 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS01425The current gene is the representative for this cluster.
PFAM architecturePAS_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1174717
Simplified PFAM architecture for HKOC_1174717
PFAM domain coverage: 255 / 578 aa (44.1%)
1 aa578 aa
PAS_3HisKAHATPase_c
- Simplified architecture: PAS_3 + HisKA + HATPase_c
- Raw architecture: PAS_3[207-280] | HisKA[317-386] | HATPase_c[435-545]
- Domain count: 3
- Matched identifier: HKOC_1174717
- Positioned domains: PAS_3 207-280 ; HisKA 317-386 ; HATPase_c 435-545
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS01425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key