1 HAMP#1
164-231 aa · 68 aa · 14.1% of protein
Raw token
HAMP:164:0.00000000000128:231:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK488_RS13545
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020708775
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708775#LK488_RS13545Stable P2CS identifier used across views.
GenomeGCF_020708775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 483 aa (50.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation3 items
2 HisKA#2
256-320 aa · 65 aa · 13.5% of protein
Raw token
HisKA:256:0.0000000022:320:65:643 HATPase_c#3
366-477 aa · 112 aa · 23.2% of protein
Raw token
HATPase_c:366:1.54e-26:477:113:109- Raw architecture: HAMP:164:0.00000000000128:231:68:69#HisKA:256:0.0000000022:320:65:64#HATPase_c:366:1.54e-26:477:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708775::NZ_JAJFCB010000053.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8990-11090Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK488_13550RefSeq proteinWP_173815158.1
Context group ID
GCF_020708775::NZ_JAJFCB010000053.1::G00051Context members
LK488_RS13545LK488_RS13550
Partner locus tags
LK488_RS13545LK488_RS13550
Partner old locus tags
LK488_13550LK488_13555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173815158.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK488_RS13545Primary locus identifier stored in the genes table.
Old locus tagLK488_13550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCB010000053.1Sequence record reported by the local genomic context database.
Genomic interval8 990-10 441 nt1 452 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 990-11 090 ntGCF_020708775::NZ_JAJFCB010000053.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708775::NZ_JAJFCB010000053.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCB010000053.1All displayed genes belong to this local TCS context.
Neighborhood span8 990-11 090 nt2 101 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 990 nt11 090 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK488_RS13545GCF_020708775#LK488_RS13545
HKClassicCurrent focus
8 990-10 441 nt · Reverse (-)
LK488_RS13550GCF_020708775#LK488_RS13550
RROmpR
10 425-11 090 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300255#G4443_RS03250Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1596893
Simplified PFAM architecture for HKOC_1596893
PFAM domain coverage: 224 / 483 aa (46.4%)
1 aa483 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[180-230] | HisKA[257-320] | HATPase_c[367-475]
- Domain count: 3
- Matched identifier: HKOC_1596893
- Positioned domains: HAMP 180-230 ; HisKA 257-320 ; HATPase_c 367-475
Cluster members and taxonomy
Representative gene: GCF_013300255#G4443_RS03250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020708775
AssemblyASM2070877v1 · Contighaploid
Genome composition3 712 433 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 51 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key