1 Response_reg#1
7-98 aa · 92 aa · 62.6% of protein
Raw token
Response_reg:7:0.000000978:98:92:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK488_RS09170
Response regulator, CheY family
Fusicatenibacter saccharivorans · GCF_020708775
ClassRRTypeCheYLength147 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020708775#LK488_RS09170Stable P2CS identifier used across views.
GenomeGCF_020708775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length147 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage92 / 147 aa (62.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa147 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:0.000000978:98:92:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020708775::NZ_JAJFCB010000024.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span41730-42173Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK488_09175RefSeq proteinWP_147399299.1
Context group ID
GCF_020708775::NZ_JAJFCB010000024.1::G00025Context members
LK488_RS09170
Partner locus tags
LK488_RS09170
Partner old locus tags
LK488_09175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147399299.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK488_RS09170Primary locus identifier stored in the genes table.
Old locus tagLK488_09175Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCB010000024.1Sequence record reported by the local genomic context database.
Genomic interval41 730-42 173 nt444 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 730-42 173 ntGCF_020708775::NZ_JAJFCB010000024.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708775::NZ_JAJFCB010000024.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCB010000024.1All displayed genes belong to this local TCS context.
Neighborhood span41 730-42 173 nt444 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 730 nt42 173 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LK488_RS09170GCF_020708775#LK488_RS09170
RRCheYCurrent focus
41 730-42 173 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480845#DXD92_RS18990Use this link to inspect the representative gene detail.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2239968
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_003480845#DXD92_RS18990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020708775
AssemblyASM2070877v1 · Contighaploid
Genome composition3 712 433 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 51 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key