1 HAMP#1
288-357 aa · 70 aa · 12.2% of protein
Raw token
HAMP:288:0.00000000000000464:357:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK488_RS08975
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020708775
ClassHKTypeClassicLength576 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708775#LK488_RS08975Stable P2CS identifier used across views.
GenomeGCF_020708775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length576 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 576 aa (43.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa576 aa
Domain-by-domain annotation3 items
2 His_kinase#2
373-445 aa · 73 aa · 12.7% of protein
Raw token
His_kinase:373:3.54e-29:445:73:803 HATPase_c#3
463-568 aa · 106 aa · 18.4% of protein
Raw token
HATPase_c:463:0.00000000000000368:568:115:109- Raw architecture: HAMP:288:0.00000000000000464:357:70:69#His_kinase:373:3.54e-29:445:73:80#HATPase_c:463:0.00000000000000368:568:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708775::NZ_JAJFCB010000023.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44156-47411Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK488_08980RefSeq proteinWP_173815417.1
Context group ID
GCF_020708775::NZ_JAJFCB010000023.1::G00024Context members
LK488_RS08975LK488_RS18595
Partner locus tags
LK488_RS08975LK488_RS18595
Partner old locus tags
LK488_08980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173815417.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK488_RS08975Primary locus identifier stored in the genes table.
Old locus tagLK488_08980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCB010000023.1Sequence record reported by the local genomic context database.
Genomic interval44 156-45 886 nt1 731 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 156-47 411 ntGCF_020708775::NZ_JAJFCB010000023.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708775::NZ_JAJFCB010000023.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCB010000023.1All displayed genes belong to this local TCS context.
Neighborhood span44 156-47 411 nt3 256 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 156 nt47 411 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK488_RS08975GCF_020708775#LK488_RS08975
HKClassicCurrent focus
44 156-45 886 nt · Reverse (-)
LK488_RS18595GCF_020708775#LK488_RS18595
RRunclassified
45 888-47 411 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300255#G4443_RS11465Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1184921
Simplified PFAM architecture for HKOC_1184921
PFAM domain coverage: 231 / 576 aa (40.1%)
1 aa576 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[306-357] | His_kinase[373-445] | HATPase_c[463-568]
- Domain count: 3
- Matched identifier: HKOC_1184921
- Positioned domains: HAMP 306-357 ; His_kinase 373-445 ; HATPase_c 463-568
Cluster members and taxonomy
Representative gene: GCF_013300255#G4443_RS11465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020708775
AssemblyASM2070877v1 · Contighaploid
Genome composition3 712 433 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 51 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key