1 CHASE#1
109-219 aa · 111 aa · 16.2% of protein
Raw token
CHASE:109:4.87e-16:219:120:183P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK488_RS07970
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_020708775
ClassHKTypeHybridLength685 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020708775#LK488_RS07970Stable P2CS identifier used across views.
GenomeGCF_020708775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
CHASEHisKAHATPase_cResponse_reg
Protein length685 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage408 / 685 aa (59.6%)Merged over positioned domains only.
Domain description1 CHASE,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa685 aa
Domain-by-domain annotation4 items
2 HisKA#2
308-374 aa · 67 aa · 9.8% of protein
Raw token
HisKA:308:0.00000000000000172:374:67:643 HATPase_c#3
421-534 aa · 114 aa · 16.6% of protein
Raw token
HATPase_c:421:1.3e-30:534:114:1094 Response_reg#4
566-681 aa · 116 aa · 16.9% of protein
Raw token
Response_reg:566:7.54e-26:681:116:111- Raw architecture: CHASE:109:4.87e-16:219:120:183#HisKA:308:0.00000000000000172:374:67:64#HATPase_c:421:1.3e-30:534:114:109#Response_reg:566:7.54e-26:681:116:111
- Domain description: 1 CHASE,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020708775::NZ_JAJFCB010000019.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span52739-54796Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK488_07975RefSeq proteinWP_118719414.1
Context group ID
GCF_020708775::NZ_JAJFCB010000019.1::G00020Context members
LK488_RS07970
Partner locus tags
LK488_RS07970
Partner old locus tags
LK488_07975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118719414.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK488_RS07970Primary locus identifier stored in the genes table.
Old locus tagLK488_07975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCB010000019.1Sequence record reported by the local genomic context database.
Genomic interval52 739-54 796 nt2 058 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span52 739-54 796 ntGCF_020708775::NZ_JAJFCB010000019.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708775::NZ_JAJFCB010000019.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCB010000019.1All displayed genes belong to this local TCS context.
Neighborhood span52 739-54 796 nt2 058 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 739 nt54 796 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LK488_RS07970GCF_020708775#LK488_RS07970
HKHybridCurrent focus
52 739-54 796 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479665#DWW13_RS04520Use this link to inspect the representative gene detail.
PFAM architectureCHASE + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0803903
Simplified PFAM architecture for HKOC_0803903
PFAM domain coverage: 386 / 685 aa (56.4%)
1 aa685 aa
CHASEHisKAHATPase_cResponse_reg
- Simplified architecture: CHASE + HisKA + HATPase_c + Response_reg
- Raw architecture: CHASE[108-195] | HisKA[308-374] | HATPase_c[421-535] | Response_reg[566-681]
- Domain count: 4
- Matched identifier: HKOC_0803903
- Positioned domains: CHASE 108-195 ; HisKA 308-374 ; HATPase_c 421-535 ; Response_reg 566-681
Cluster members and taxonomy
Representative gene: GCF_003479665#DWW13_RS04520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020708775
AssemblyASM2070877v1 · Contighaploid
Genome composition3 712 433 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 51 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key