1 SBP_bac_3#1
2-148 aa · 147 aa · 17.6% of protein
Raw token
SBP_bac_3:2:1.92e-20:148:156:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK488_RS06475
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_020708775
ClassHKTypeHybridLength837 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020708775#LK488_RS06475Stable P2CS identifier used across views.
GenomeGCF_020708775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length837 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage649 / 837 aa (77.5%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa837 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
182-380 aa · 199 aa · 23.8% of protein
Raw token
SBP_bac_3:182:0.000000000149:380:216:2243 HisKA#3
461-526 aa · 66 aa · 7.9% of protein
Raw token
HisKA:461:1.34e-19:526:66:644 HATPase_c#4
573-691 aa · 119 aa · 14.2% of protein
Raw token
HATPase_c:573:4.87e-28:691:120:1095 Response_reg#5
714-831 aa · 118 aa · 14.1% of protein
Raw token
Response_reg:714:6.7e-30:831:118:111- Raw architecture: SBP_bac_3:2:1.92e-20:148:156:224#SBP_bac_3:182:0.000000000149:380:216:224#HisKA:461:1.34e-19:526:66:64#HATPase_c:573:4.87e-28:691:120:109#Response_reg:714:6.7e-30:831:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020708775::NZ_JAJFCB010000014.1::G00009
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span71974-74487Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK488_06480RefSeq proteinWP_227797322.1
Context group ID
GCF_020708775::NZ_JAJFCB010000014.1::G00009Context members
LK488_RS06475
Partner locus tags
LK488_RS06475
Partner old locus tags
LK488_06480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227797322.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK488_RS06475Primary locus identifier stored in the genes table.
Old locus tagLK488_06480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCB010000014.1Sequence record reported by the local genomic context database.
Genomic interval71 974-74 487 nt2 514 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span71 974-74 487 ntGCF_020708775::NZ_JAJFCB010000014.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708775::NZ_JAJFCB010000014.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCB010000014.1All displayed genes belong to this local TCS context.
Neighborhood span71 974-74 487 nt2 514 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 974 nt74 487 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LK488_RS06475GCF_020708775#LK488_RS06475
HKHybridCurrent focus
71 974-74 487 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300255#G4443_RS08415Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0338375
Simplified PFAM architecture for HKOC_0338375
PFAM domain coverage: 698 / 942 aa (74.1%)
1 aa942 aa
SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[49-241] | SBP_bac_3[282-485] | HisKA[566-631] | HATPase_c[679-795] | Response_reg[819-936]
- Domain count: 5
- Matched identifier: HKOC_0338375
- Positioned domains: SBP_bac_3 49-241 ; SBP_bac_3 282-485 ; HisKA 566-631 ; HATPase_c 679-795 ; Response_reg 819-936
Cluster members and taxonomy
Representative gene: GCF_013300255#G4443_RS08415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020708775
AssemblyASM2070877v1 · Contighaploid
Genome composition3 712 433 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 51 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key