1 HisKA#1
265-331 aa · 67 aa · 10.5% of protein
Raw token
HisKA:265:5.4e-18:331:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK488_RS04320
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_020708775
ClassHKTypeHybridLength640 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708775#LK488_RS04320Stable P2CS identifier used across views.
GenomeGCF_020708775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length640 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage293 / 640 aa (45.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa640 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
384-495 aa · 112 aa · 17.5% of protein
Raw token
HATPase_c:384:6.33e-29:495:112:1093 Response_reg#3
520-633 aa · 114 aa · 17.8% of protein
Raw token
Response_reg:520:9.69e-29:633:114:111- Raw architecture: HisKA:265:5.4e-18:331:67:64#HATPase_c:384:6.33e-29:495:112:109#Response_reg:520:9.69e-29:633:114:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708775::NZ_JAJFCB010000009.1::G00064
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span130-4361Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK488_04325RefSeq proteinWP_118640988.1
Context group ID
GCF_020708775::NZ_JAJFCB010000009.1::G00064Context members
LK488_RS04310LK488_RS04320
Partner locus tags
LK488_RS04310LK488_RS04320
Partner old locus tags
LK488_04315LK488_04325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118640988.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK488_RS04320Primary locus identifier stored in the genes table.
Old locus tagLK488_04325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCB010000009.1Sequence record reported by the local genomic context database.
Genomic interval2 439-4 361 nt1 923 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span130-4 361 ntGCF_020708775::NZ_JAJFCB010000009.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708775::NZ_JAJFCB010000009.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCB010000009.1All displayed genes belong to this local TCS context.
Neighborhood span130-4 361 nt4 232 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
130 nt4 361 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK488_RS04310GCF_020708775#LK488_RS04310
HKHybrid
130-2 076 nt · Forward (+)
LK488_RS04320GCF_020708775#LK488_RS04320
HKHybridCurrent focus
2 439-4 361 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480845#DXD92_RS15720Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0921665
Simplified PFAM architecture for HKOC_0921665
PFAM domain coverage: 295 / 640 aa (46.1%)
1 aa640 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[265-330] | HATPase_c[381-494] | Response_reg[520-634]
- Domain count: 3
- Matched identifier: HKOC_0921665
- Positioned domains: HisKA 265-330 ; HATPase_c 381-494 ; Response_reg 520-634
Cluster members and taxonomy
Representative gene: GCF_003480845#DXD92_RS15720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020708775
AssemblyASM2070877v1 · Contighaploid
Genome composition3 712 433 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 51 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key