1 His_kinase#1
389-463 aa · 75 aa · 12.1% of protein
Raw token
His_kinase:389:1.08e-26:463:75:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK488_RS02960
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020708775
ClassHKTypeClassicLength621 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708775#LK488_RS02960Stable P2CS identifier used across views.
GenomeGCF_020708775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length621 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 621 aa (29.6%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa621 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
486-594 aa · 109 aa · 17.6% of protein
Raw token
HATPase_c:486:0.0000000000402:594:109:109- Raw architecture: His_kinase:389:1.08e-26:463:75:80#HATPase_c:486:0.0000000000402:594:109:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708775::NZ_JAJFCB010000005.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83244-86529Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK488_02960RefSeq proteinWP_118720532.1
Context group ID
GCF_020708775::NZ_JAJFCB010000005.1::G00049Context members
LK488_RS02955LK488_RS02960
Partner locus tags
LK488_RS02955LK488_RS02960
Partner old locus tags
LK488_02955LK488_02960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118720532.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK488_RS02960Primary locus identifier stored in the genes table.
Old locus tagLK488_02960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCB010000005.1Sequence record reported by the local genomic context database.
Genomic interval84 664-86 529 nt1 866 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span83 244-86 529 ntGCF_020708775::NZ_JAJFCB010000005.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708775::NZ_JAJFCB010000005.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCB010000005.1All displayed genes belong to this local TCS context.
Neighborhood span83 244-86 529 nt3 286 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 244 nt86 529 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK488_RS02955GCF_020708775#LK488_RS02955
RRunclassified
83 244-84 692 nt · Reverse (-)
LK488_RS02960GCF_020708775#LK488_RS02960
HKClassicCurrent focus
84 664-86 529 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479665#DWW13_RS15665Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0970631
Simplified PFAM architecture for HKOC_0970631
PFAM domain coverage: 184 / 621 aa (29.6%)
1 aa621 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[389-463] | HATPase_c[485-593]
- Domain count: 2
- Matched identifier: HKOC_0970631
- Positioned domains: His_kinase 389-463 ; HATPase_c 485-593
Cluster members and taxonomy
Representative gene: GCF_003479665#DWW13_RS15665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020708775
AssemblyASM2070877v1 · Contighaploid
Genome composition3 712 433 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 51 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key