1 Response_reg#1
5-117 aa · 113 aa · 23.4% of protein
Raw token
Response_reg:5:6.9e-32:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK488_RS02955
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_020708775
ClassRRTypeunclassifiedLength482 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708775#LK488_RS02955Stable P2CS identifier used across views.
GenomeGCF_020708775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length482 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 482 aa (40.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa482 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
377-418 aa · 42 aa · 8.7% of protein
Raw token
HTH_AraC:377:0.00000129:418:42:423 HTH_AraC#3
430-468 aa · 39 aa · 8.1% of protein
Raw token
HTH_AraC:430:0.000000123:468:39:42- Raw architecture: Response_reg:5:6.9e-32:117:113:111#HTH_AraC:377:0.00000129:418:42:42#HTH_AraC:430:0.000000123:468:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708775::NZ_JAJFCB010000005.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83244-86529Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK488_02955RefSeq proteinWP_055218831.1
Context group ID
GCF_020708775::NZ_JAJFCB010000005.1::G00049Context members
LK488_RS02955LK488_RS02960
Partner locus tags
LK488_RS02955LK488_RS02960
Partner old locus tags
LK488_02955LK488_02960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055218831.1Primary protein accession used for annex mappings.
UniProt accessionA0A174NLT0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174NLT0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK488_RS02955Primary locus identifier stored in the genes table.
Old locus tagLK488_02955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCB010000005.1Sequence record reported by the local genomic context database.
Genomic interval83 244-84 692 nt1 449 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span83 244-86 529 ntGCF_020708775::NZ_JAJFCB010000005.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708775::NZ_JAJFCB010000005.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCB010000005.1All displayed genes belong to this local TCS context.
Neighborhood span83 244-86 529 nt3 286 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 244 nt86 529 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK488_RS02955GCF_020708775#LK488_RS02955
RRunclassifiedCurrent focus
83 244-84 692 nt · Reverse (-)
LK488_RS02960GCF_020708775#LK488_RS02960
HKClassic
84 664-86 529 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS15365Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0179389
Simplified PFAM architecture for RROC_0179389
PFAM domain coverage: 190 / 482 aa (39.4%)
1 aa482 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[391-468]
- Domain count: 2
- Matched identifier: RROC_0179389
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 391-468 ; HTH_18 391-468
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS15365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020708775
AssemblyASM2070877v1 · Contighaploid
Genome composition3 712 433 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 51 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key