1 Response_reg#1
4-115 aa · 112 aa · 21.3% of protein
Raw token
Response_reg:4:9.65e-24:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK488_RS02030
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_020708775
ClassRRTypeunclassifiedLength527 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020708775#LK488_RS02030Stable P2CS identifier used across views.
GenomeGCF_020708775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length527 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 527 aa (28.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa527 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
489-525 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:489:0.00000000134:525:37:42- Raw architecture: Response_reg:4:9.65e-24:115:112:111#HTH_AraC:489:0.00000000134:525:37:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020708775::NZ_JAJFCB010000003.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span121452-123035Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK488_02030RefSeq proteinWP_117804861.1
Context group ID
GCF_020708775::NZ_JAJFCB010000003.1::G00035Context members
LK488_RS02030
Partner locus tags
LK488_RS02030
Partner old locus tags
LK488_02030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117804861.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK488_RS02030Primary locus identifier stored in the genes table.
Old locus tagLK488_02030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCB010000003.1Sequence record reported by the local genomic context database.
Genomic interval121 452-123 035 nt1 584 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span121 452-123 035 ntGCF_020708775::NZ_JAJFCB010000003.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708775::NZ_JAJFCB010000003.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCB010000003.1All displayed genes belong to this local TCS context.
Neighborhood span121 452-123 035 nt1 584 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
121 452 nt123 035 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LK488_RS02030GCF_020708775#LK488_RS02030
RRunclassifiedCurrent focus
121 452-123 035 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460565#DWZ44_RS10970Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0116255
Simplified PFAM architecture for RROC_0116255
PFAM domain coverage: 191 / 527 aa (36.2%)
1 aa527 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[447-525]
- Domain count: 2
- Matched identifier: RROC_0116255
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 447-525 ; HTH_18 447-525
Cluster members and taxonomy
Representative gene: GCF_003460565#DWZ44_RS10970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020708775
AssemblyASM2070877v1 · Contighaploid
Genome composition3 712 433 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 51 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key