1 Response_reg#1
4-118 aa · 115 aa · 21.9% of protein
Raw token
Response_reg:4:5.79e-30:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK487_RS08415
Response regulator, unclassified
Agathobacter rectalis · GCF_020708695
ClassRRTypeunclassifiedLength525 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708695#LK487_RS08415Stable P2CS identifier used across views.
GenomeGCF_020708695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length525 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 525 aa (27.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa525 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
481-509 aa · 29 aa · 5.5% of protein
Raw token
HTH_AraC:481:0.0000563:509:29:42- Raw architecture: Response_reg:4:5.79e-30:118:115:111#HTH_AraC:481:0.0000563:509:29:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708695::NZ_JAJFBX010000009.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span139111-142386Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK487_08400RefSeq proteinWP_173848915.1
Context group ID
GCF_020708695::NZ_JAJFBX010000009.1::G00053Context members
LK487_RS08410LK487_RS08415
Partner locus tags
LK487_RS08410LK487_RS08415
Partner old locus tags
LK487_08395LK487_08400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173848915.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WKA1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WKA1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK487_RS08415Primary locus identifier stored in the genes table.
Old locus tagLK487_08400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFBX010000009.1Sequence record reported by the local genomic context database.
Genomic interval140 809-142 386 nt1 578 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span139 111-142 386 ntGCF_020708695::NZ_JAJFBX010000009.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708695::NZ_JAJFBX010000009.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFBX010000009.1All displayed genes belong to this local TCS context.
Neighborhood span139 111-142 386 nt3 276 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 111 nt142 386 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK487_RS08410GCF_020708695#LK487_RS08410
HKClassic
139 111-140 784 nt · Forward (+)
LK487_RS08415GCF_020708695#LK487_RS08415
RRunclassifiedCurrent focus
140 809-142 386 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013303785#G5A04_RS04200Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0119492
Simplified PFAM architecture for RROC_0119492
PFAM domain coverage: 188 / 525 aa (35.8%)
1 aa525 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[435-510]
- Domain count: 2
- Matched identifier: RROC_0119492
- Positioned domains: Response_reg 4-115 ; HTH_18 435-510
Cluster members and taxonomy
Representative gene: GCF_013303785#G5A04_RS04200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020708695
AssemblyASM2070869v1 · Contighaploid
Genome composition3 717 369 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 35 · RR 50CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key