1 HAMP#1
264-331 aa · 68 aa · 12.2% of protein
Raw token
HAMP:264:0.0000000000914:331:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK487_RS08410
Histidine kinase, Classic
Agathobacter rectalis · GCF_020708695
ClassHKTypeClassicLength557 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708695#LK487_RS08410Stable P2CS identifier used across views.
GenomeGCF_020708695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length557 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 557 aa (46.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa557 aa
Domain-by-domain annotation3 items
2 His_kinase#2
348-427 aa · 80 aa · 14.4% of protein
Raw token
His_kinase:348:1.79e-27:427:80:803 HATPase_c#3
443-552 aa · 110 aa · 19.7% of protein
Raw token
HATPase_c:443:0.000000000000103:552:111:109- Raw architecture: HAMP:264:0.0000000000914:331:68:69#His_kinase:348:1.79e-27:427:80:80#HATPase_c:443:0.000000000000103:552:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708695::NZ_JAJFBX010000009.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span139111-142386Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK487_08395RefSeq proteinWP_173848913.1
Context group ID
GCF_020708695::NZ_JAJFBX010000009.1::G00053Context members
LK487_RS08410LK487_RS08415
Partner locus tags
LK487_RS08410LK487_RS08415
Partner old locus tags
LK487_08395LK487_08400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173848913.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WK94Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WK94_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK487_RS08410Primary locus identifier stored in the genes table.
Old locus tagLK487_08395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFBX010000009.1Sequence record reported by the local genomic context database.
Genomic interval139 111-140 784 nt1 674 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span139 111-142 386 ntGCF_020708695::NZ_JAJFBX010000009.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708695::NZ_JAJFBX010000009.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFBX010000009.1All displayed genes belong to this local TCS context.
Neighborhood span139 111-142 386 nt3 276 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 111 nt142 386 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK487_RS08410GCF_020708695#LK487_RS08410
HKClassicCurrent focus
139 111-140 784 nt · Forward (+)
LK487_RS08415GCF_020708695#LK487_RS08415
RRunclassified
140 809-142 386 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013303785#G5A04_RS04195Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1269561
Simplified PFAM architecture for HKOC_1269561
PFAM domain coverage: 235 / 557 aa (42.2%)
1 aa557 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[285-331] | His_kinase[349-427] | HATPase_c[443-551]
- Domain count: 3
- Matched identifier: HKOC_1269561
- Positioned domains: HAMP 285-331 ; His_kinase 349-427 ; HATPase_c 443-551
Cluster members and taxonomy
Representative gene: GCF_013303785#G5A04_RS04195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020708695
AssemblyASM2070869v1 · Contighaploid
Genome composition3 717 369 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 35 · RR 50CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key