1 HAMP#1
89-159 aa · 71 aa · 18.4% of protein
Raw token
HAMP:89:0.0000000000424:159:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK487_RS08345
Histidine kinase, Classic
Agathobacter rectalis · GCF_020708695
ClassHKTypeClassicLength385 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708695#LK487_RS08345Stable P2CS identifier used across views.
GenomeGCF_020708695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length385 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 385 aa (64.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa385 aa
Domain-by-domain annotation3 items
2 HisKA#2
164-230 aa · 67 aa · 17.4% of protein
Raw token
HisKA:164:0.000000000427:230:67:643 HATPase_c#3
272-380 aa · 109 aa · 28.3% of protein
Raw token
HATPase_c:272:2.13e-31:380:109:109- Raw architecture: HAMP:89:0.0000000000424:159:71:69#HisKA:164:0.000000000427:230:67:64#HATPase_c:272:2.13e-31:380:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708695::NZ_JAJFBX010000009.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span125986-127820Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK487_08330RefSeq proteinWP_173848898.1
Context group ID
GCF_020708695::NZ_JAJFBX010000009.1::G00052Context members
LK487_RS08345LK487_RS08350
Partner locus tags
LK487_RS08345LK487_RS08350
Partner old locus tags
LK487_08330LK487_08335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173848898.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WQU5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WQU5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK487_RS08345Primary locus identifier stored in the genes table.
Old locus tagLK487_08330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFBX010000009.1Sequence record reported by the local genomic context database.
Genomic interval125 986-127 143 nt1 158 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span125 986-127 820 ntGCF_020708695::NZ_JAJFBX010000009.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708695::NZ_JAJFBX010000009.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFBX010000009.1All displayed genes belong to this local TCS context.
Neighborhood span125 986-127 820 nt1 835 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
125 986 nt127 820 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK487_RS08345GCF_020708695#LK487_RS08345
HKClassicCurrent focus
125 986-127 143 nt · Reverse (-)
LK487_RS08350GCF_020708695#LK487_RS08350
RROmpR
127 140-127 820 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013303785#G5A04_RS04130Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2567511
Simplified PFAM architecture for HKOC_2567511
PFAM domain coverage: 226 / 385 aa (58.7%)
1 aa385 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[106-158] | HisKA[164-229] | HATPase_c[275-381]
- Domain count: 3
- Matched identifier: HKOC_2567511
- Positioned domains: HAMP 106-158 ; HisKA 164-229 ; HATPase_c 275-381
Cluster members and taxonomy
Representative gene: GCF_013303785#G5A04_RS04130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020708695
AssemblyASM2070869v1 · Contighaploid
Genome composition3 717 369 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 35 · RR 50CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key