1 Response_reg#1
4-116 aa · 113 aa · 48.1% of protein
Raw token
Response_reg:4:0.00000000000186:116:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK487_RS06335
Response regulator LytTR family
Agathobacter rectalis · GCF_020708695
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020708695#LK487_RS06335Stable P2CS identifier used across views.
GenomeGCF_020708695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage204 / 235 aa (86.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-226 aa · 91 aa · 38.7% of protein
Raw token
LytTR:136:1.86e-17:226:96:98- Raw architecture: Response_reg:4:0.00000000000186:116:115:111#LytTR:136:1.86e-17:226:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020708695::NZ_JAJFBX010000007.1::G00047
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span22560-23267Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK487_06325RefSeq proteinWP_005602856.1
Context group ID
GCF_020708695::NZ_JAJFBX010000007.1::G00047Context members
LK487_RS06335
Partner locus tags
LK487_RS06335
Partner old locus tags
LK487_06325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005602856.1Primary protein accession used for annex mappings.
UniProt accessionD4L0U1Primary UniProt accession resolved in the annex database.
UniProt IDD4L0U1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK487_RS06335Primary locus identifier stored in the genes table.
Old locus tagLK487_06325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFBX010000007.1Sequence record reported by the local genomic context database.
Genomic interval22 560-23 267 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 560-23 267 ntGCF_020708695::NZ_JAJFBX010000007.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708695::NZ_JAJFBX010000007.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFBX010000007.1All displayed genes belong to this local TCS context.
Neighborhood span22 560-23 267 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 560 nt23 267 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LK487_RS06335GCF_020708695#LK487_RS06335
RRLytTRCurrent focus
22 560-23 267 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS06420Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016731
Simplified PFAM architecture for RROC_1016731
PFAM domain coverage: 201 / 235 aa (85.5%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[138-226]
- Domain count: 2
- Matched identifier: RROC_1016731
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; LytTR 138-226 ; LytTR 138-226
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS06420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020708695
AssemblyASM2070869v1 · Contighaploid
Genome composition3 717 369 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 35 · RR 50CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key