1 Response_reg#1
3-103 aa · 101 aa · 46.3% of protein
Raw token
Response_reg:3:5.23e-26:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK487_RS05590
Response regulator NarL family
Agathobacter rectalis · GCF_020708695
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708695#LK487_RS05590Stable P2CS identifier used across views.
GenomeGCF_020708695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 218 aa (70.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-212 aa · 53 aa · 24.3% of protein
Raw token
HTH_LUXR:160:5.07e-19:212:53:58- Raw architecture: Response_reg:3:5.23e-26:103:101:111#HTH_LUXR:160:5.07e-19:212:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708695::NZ_JAJFBX010000006.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23709-25552Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK487_05585RefSeq proteinWP_173840660.1
Context group ID
GCF_020708695::NZ_JAJFBX010000006.1::G00045Context members
LK487_RS05585LK487_RS05590
Partner locus tags
LK487_RS05585LK487_RS05590
Partner old locus tags
LK487_05580LK487_05585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173840660.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP7B4S5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP7B4S5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK487_RS05590Primary locus identifier stored in the genes table.
Old locus tagLK487_05585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFBX010000006.1Sequence record reported by the local genomic context database.
Genomic interval24 896-25 552 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 709-25 552 ntGCF_020708695::NZ_JAJFBX010000006.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708695::NZ_JAJFBX010000006.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFBX010000006.1All displayed genes belong to this local TCS context.
Neighborhood span23 709-25 552 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 709 nt25 552 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK487_RS05585GCF_020708695#LK487_RS05585
HKClassic
23 709-24 851 nt · Forward (+)
LK487_RS05590GCF_020708695#LK487_RS05590
RRNarLCurrent focus
24 896-25 552 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299645#G4362_RS10785Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1824226
Simplified PFAM architecture for RROC_1824226
PFAM domain coverage: 155 / 218 aa (71.1%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[160-212]
- Domain count: 2
- Matched identifier: RROC_1824226
- Positioned domains: Response_reg 3-104 ; GerE 160-212
Cluster members and taxonomy
Representative gene: GCF_013299645#G4362_RS10785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020708695
AssemblyASM2070869v1 · Contighaploid
Genome composition3 717 369 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 35 · RR 50CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key