1 HisKA_3#1
191-251 aa · 61 aa · 16.1% of protein
Raw token
HisKA_3:191:0.0000000000000414:251:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK487_RS05585
Histidine kinase, Classic
Agathobacter rectalis · GCF_020708695
ClassHKTypeClassicLength380 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708695#LK487_RS05585Stable P2CS identifier used across views.
GenomeGCF_020708695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length380 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage137 / 380 aa (36.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa380 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
295-370 aa · 76 aa · 20.0% of protein
Raw token
HATPase_c:295:0.000000000173:370:88:109- Raw architecture: HisKA_3:191:0.0000000000000414:251:63:68#HATPase_c:295:0.000000000173:370:88:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708695::NZ_JAJFBX010000006.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23709-25552Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK487_05580RefSeq proteinWP_173840661.1
Context group ID
GCF_020708695::NZ_JAJFBX010000006.1::G00045Context members
LK487_RS05585LK487_RS05590
Partner locus tags
LK487_RS05585LK487_RS05590
Partner old locus tags
LK487_05580LK487_05585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173840661.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP7E453Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP7E453_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK487_RS05585Primary locus identifier stored in the genes table.
Old locus tagLK487_05580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFBX010000006.1Sequence record reported by the local genomic context database.
Genomic interval23 709-24 851 nt1 143 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 709-25 552 ntGCF_020708695::NZ_JAJFBX010000006.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708695::NZ_JAJFBX010000006.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFBX010000006.1All displayed genes belong to this local TCS context.
Neighborhood span23 709-25 552 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 709 nt25 552 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK487_RS05585GCF_020708695#LK487_RS05585
HKClassicCurrent focus
23 709-24 851 nt · Forward (+)
LK487_RS05590GCF_020708695#LK487_RS05590
RRNarL
24 896-25 552 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299645#G4362_RS10790Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2613194
Simplified PFAM architecture for HKOC_2613194
PFAM domain coverage: 145 / 380 aa (38.2%)
1 aa380 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[191-252] | HATPase_c[295-377]
- Domain count: 2
- Matched identifier: HKOC_2613194
- Positioned domains: HisKA_3 191-252 ; HATPase_c 295-377
Cluster members and taxonomy
Representative gene: GCF_013299645#G4362_RS10790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020708695
AssemblyASM2070869v1 · Contighaploid
Genome composition3 717 369 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 35 · RR 50CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key