1 HisKA#1
79-147 aa · 69 aa · 21.9% of protein
Raw token
HisKA:79:0.00000000000414:147:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK487_RS02600
Histidine kinase, Classic
Agathobacter rectalis · GCF_020708695
ClassHKTypeClassicLength315 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020708695#LK487_RS02600Stable P2CS identifier used across views.
GenomeGCF_020708695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length315 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 315 aa (60.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa315 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
194-313 aa · 120 aa · 38.1% of protein
Raw token
HATPase_c:194:0.00000000000000282:313:124:109- Raw architecture: HisKA:79:0.00000000000414:147:69:64#HATPase_c:194:0.00000000000000282:313:124:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020708695::NZ_JAJFBX010000002.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span146869-147816Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK487_02595RefSeq proteinWP_173848630.1
Context group ID
GCF_020708695::NZ_JAJFBX010000002.1::G00020Context members
LK487_RS02600
Partner locus tags
LK487_RS02600
Partner old locus tags
LK487_02595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173848630.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WL28Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WL28_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK487_RS02600Primary locus identifier stored in the genes table.
Old locus tagLK487_02595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFBX010000002.1Sequence record reported by the local genomic context database.
Genomic interval146 869-147 816 nt948 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span146 869-147 816 ntGCF_020708695::NZ_JAJFBX010000002.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708695::NZ_JAJFBX010000002.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFBX010000002.1All displayed genes belong to this local TCS context.
Neighborhood span146 869-147 816 nt948 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
146 869 nt147 816 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LK487_RS02600GCF_020708695#LK487_RS02600
HKClassicCurrent focus
146 869-147 816 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013303785#G5A04_RS02355Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2873672
Simplified PFAM architecture for HKOC_2873672
PFAM domain coverage: 174 / 315 aa (55.2%)
1 aa315 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[89-146] | HATPase_c[196-311]
- Domain count: 2
- Matched identifier: HKOC_2873672
- Positioned domains: HisKA 89-146 ; HATPase_c 196-311
Cluster members and taxonomy
Representative gene: GCF_013303785#G5A04_RS02355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020708695
AssemblyASM2070869v1 · Contighaploid
Genome composition3 717 369 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 35 · RR 50CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key