1 Response_reg#1
1-96 aa · 96 aa · 45.3% of protein
Raw token
Response_reg:1:0.000000000232:96:96:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKE04_RS02125
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_020687105
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020687105#LKE04_RS02125Stable P2CS identifier used across views.
GenomeGCF_020687105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 212 aa (71.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
148-202 aa · 55 aa · 25.9% of protein
Raw token
HTH_LUXR:148:3.09e-19:202:55:58- Raw architecture: Response_reg:1:0.000000000232:96:96:111#HTH_LUXR:148:3.09e-19:202:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020687105::NZ_JAJEQA010000003.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span32474-33112Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKE04_02125RefSeq proteinWP_236717806.1
Context group ID
GCF_020687105::NZ_JAJEQA010000003.1::G00011Context members
LKE04_RS02125
Partner locus tags
LKE04_RS02125
Partner old locus tags
LKE04_02125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236717806.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKE04_RS02125Primary locus identifier stored in the genes table.
Old locus tagLKE04_02125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEQA010000003.1Sequence record reported by the local genomic context database.
Genomic interval32 474-33 112 nt639 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span32 474-33 112 ntGCF_020687105::NZ_JAJEQA010000003.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020687105::NZ_JAJEQA010000003.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEQA010000003.1All displayed genes belong to this local TCS context.
Neighborhood span32 474-33 112 nt639 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 474 nt33 112 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LKE04_RS02125GCF_020687105#LKE04_RS02125
RRNarLCurrent focus
32 474-33 112 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000771445#OU14_RS02035Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1987531
Simplified PFAM architecture for RROC_1987531
PFAM domain coverage: 155 / 212 aa (73.1%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[2-102] | GerE[149-202]
- Domain count: 2
- Matched identifier: RROC_1987531
- Positioned domains: Response_reg 2-102 ; Response_reg 2-102 ; GerE 149-202 ; GerE 149-202
Cluster members and taxonomy
Representative gene: GCF_000771445#OU14_RS02035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_020687105
AssemblyASM2068710v1 · Contighaploid
Genome composition2 227 239 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 27 · HK 11 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key