1 HAMP#1
207-276 aa · 70 aa · 12.5% of protein
Raw token
HAMP:207:0.0000000000000387:276:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKE04_RS01230
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_020687105
ClassHKTypeClassicLength558 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020687105#LKE04_RS01230Stable P2CS identifier used across views.
GenomeGCF_020687105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length558 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 558 aa (44.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
287-354 aa · 68 aa · 12.2% of protein
Raw token
HisKA:287:0.00000000000000922:354:68:643 HATPase_c#3
401-511 aa · 111 aa · 19.9% of protein
Raw token
HATPase_c:401:1.24e-29:511:111:109- Raw architecture: HAMP:207:0.0000000000000387:276:70:69#HisKA:287:0.00000000000000922:354:68:64#HATPase_c:401:1.24e-29:511:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020687105::NZ_JAJEQA010000002.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51361-53779Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKE04_01230RefSeq proteinWP_051662159.1
Context group ID
GCF_020687105::NZ_JAJEQA010000002.1::G00008Context members
LKE04_RS01230LKE04_RS01235
Partner locus tags
LKE04_RS01230LKE04_RS01235
Partner old locus tags
LKE04_01230LKE04_01235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_051662159.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKE04_RS01230Primary locus identifier stored in the genes table.
Old locus tagLKE04_01230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEQA010000002.1Sequence record reported by the local genomic context database.
Genomic interval51 361-53 037 nt1 677 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 361-53 779 ntGCF_020687105::NZ_JAJEQA010000002.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020687105::NZ_JAJEQA010000002.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEQA010000002.1All displayed genes belong to this local TCS context.
Neighborhood span51 361-53 779 nt2 419 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 361 nt53 779 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKE04_RS01230GCF_020687105#LKE04_RS01230
HKClassicCurrent focus
51 361-53 037 nt · Reverse (-)
LKE04_RS01235GCF_020687105#LKE04_RS01235
RROmpR
53 045-53 779 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000940535#BPSEU7765_RS03465Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1265070
Simplified PFAM architecture for HKOC_1265070
PFAM domain coverage: 229 / 558 aa (41.0%)
1 aa558 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[224-275] | HisKA[288-354] | HATPase_c[401-510]
- Domain count: 3
- Matched identifier: HKOC_1265070
- Positioned domains: HAMP 224-275 ; HisKA 288-354 ; HATPase_c 401-510
Cluster members and taxonomy
Representative gene: GCF_000940535#BPSEU7765_RS03465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_020687105
AssemblyASM2068710v1 · Contighaploid
Genome composition2 227 239 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 27 · HK 11 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key