1 HisKA_3#1
242-304 aa · 63 aa · 7.2% of protein
Raw token
HisKA_3:242:3.87e-18:304:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKE04_RS01085
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_020687105
ClassHKTypeClassicLength869 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020687105#LKE04_RS01085Stable P2CS identifier used across views.
GenomeGCF_020687105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length869 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 869 aa (17.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa869 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
353-439 aa · 87 aa · 10.0% of protein
Raw token
HATPase_c:353:0.000000000000221:439:104:109- Raw architecture: HisKA_3:242:3.87e-18:304:63:68#HATPase_c:353:0.000000000000221:439:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020687105::NZ_JAJEQA010000002.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14880-18312Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKE04_01085RefSeq proteinWP_227572224.1
Context group ID
GCF_020687105::NZ_JAJEQA010000002.1::G00007Context members
LKE04_RS01085LKE04_RS01090
Partner locus tags
LKE04_RS01085LKE04_RS01090
Partner old locus tags
LKE04_01085LKE04_01090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227572224.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKE04_RS01085Primary locus identifier stored in the genes table.
Old locus tagLKE04_01085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEQA010000002.1Sequence record reported by the local genomic context database.
Genomic interval14 880-17 489 nt2 610 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 880-18 312 ntGCF_020687105::NZ_JAJEQA010000002.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020687105::NZ_JAJEQA010000002.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEQA010000002.1All displayed genes belong to this local TCS context.
Neighborhood span14 880-18 312 nt3 433 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 880 nt18 312 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKE04_RS01085GCF_020687105#LKE04_RS01085
HKClassicCurrent focus
14 880-17 489 nt · Forward (+)
LKE04_RS01090GCF_020687105#LKE04_RS01090
RRNarL
17 566-18 312 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020687105#LKE04_RS01085The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0460233
Simplified PFAM architecture for HKOC_0460233
PFAM domain coverage: 422 / 869 aa (48.6%)
1 aa869 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-148] | HisKA_3[242-304] | HATPase_c[353-440] | DUF7134[554-685]
- Domain count: 4
- Matched identifier: HKOC_0460233
- Positioned domains: DUF7134 10-148 ; HisKA_3 242-304 ; HATPase_c 353-440 ; DUF7134 554-685
Cluster members and taxonomy
Representative gene: GCF_020687105#LKE04_RS01085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_020687105
AssemblyASM2068710v1 · Contighaploid
Genome composition2 227 239 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 27 · HK 11 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key