1 GAF_3#1
155-274 aa · 120 aa · 23.0% of protein
Raw token
GAF_3:155:0.0000489:274:126:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD69_RS04955
Histidine kinase, Classic
Blautia wexlerae · GCF_020687085
ClassHKTypeClassicLength521 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020687085#LKD69_RS04955Stable P2CS identifier used across views.
GenomeGCF_020687085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GAF_3HisKAHATPase_c
Protein length521 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 521 aa (57.8%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa521 aa
Domain-by-domain annotation3 items
2 HisKA#2
294-361 aa · 68 aa · 13.1% of protein
Raw token
HisKA:294:0.0000000000101:361:68:643 HATPase_c#3
404-516 aa · 113 aa · 21.7% of protein
Raw token
HATPase_c:404:5.11e-31:516:113:109- Raw architecture: GAF_3:155:0.0000489:274:126:129#HisKA:294:0.0000000000101:361:68:64#HATPase_c:404:5.11e-31:516:113:109
- Domain description: 1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020687085::NZ_JAJEPZ010000010.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span79078-81340Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD69_04955RefSeq proteinWP_118613223.1
Context group ID
GCF_020687085::NZ_JAJEPZ010000010.1::G00005Context members
LKD69_RS04950LKD69_RS04955
Partner locus tags
LKD69_RS04950LKD69_RS04955
Partner old locus tags
LKD69_04950LKD69_04955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118613223.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD69_RS04955Primary locus identifier stored in the genes table.
Old locus tagLKD69_04955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPZ010000010.1Sequence record reported by the local genomic context database.
Genomic interval79 775-81 340 nt1 566 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span79 078-81 340 ntGCF_020687085::NZ_JAJEPZ010000010.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020687085::NZ_JAJEPZ010000010.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPZ010000010.1All displayed genes belong to this local TCS context.
Neighborhood span79 078-81 340 nt2 263 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 078 nt81 340 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD69_RS04950GCF_020687085#LKD69_RS04950
RROmpR
79 078-79 782 nt · Reverse (-)
LKD69_RS04955GCF_020687085#LKD69_RS04955
HKClassicCurrent focus
79 775-81 340 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020687085#LKD69_RS04955The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1389253
Simplified PFAM architecture for HKOC_1389253
PFAM domain coverage: 286 / 521 aa (54.9%)
1 aa521 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[25-131] | HisKA[294-361] | HATPase_c[405-515]
- Domain count: 3
- Matched identifier: HKOC_1389253
- Positioned domains: DUF4118 25-131 ; HisKA 294-361 ; HATPase_c 405-515
Cluster members and taxonomy
Representative gene: GCF_020687085#LKD69_RS04955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_020687085
AssemblyASM2068708v1 · Contighaploid
Genome composition4 009 646 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 115 · HK 58 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key