1 Response_reg#1
4-116 aa · 113 aa · 22.1% of protein
Raw token
Response_reg:4:1.59e-33:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS16405
Response regulator, unclassified
Blautia fusiformis · GCF_020686995
ClassRRTypeunclassifiedLength512 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS16405Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length512 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 512 aa (37.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa512 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
411-450 aa · 40 aa · 7.8% of protein
Raw token
HTH_AraC:411:0.00000317:450:40:423 HTH_AraC#3
463-500 aa · 38 aa · 7.4% of protein
Raw token
HTH_AraC:463:0.0000000122:500:38:42- Raw architecture: Response_reg:4:1.59e-33:116:113:111#HTH_AraC:411:0.00000317:450:40:42#HTH_AraC:463:0.0000000122:500:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000032.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8417-11633Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_16475RefSeq proteinWP_059085412.1
Context group ID
GCF_020686995::NZ_JAJEPT010000032.1::G00035Context members
LKD46_RS16405LKD46_RS16410
Partner locus tags
LKD46_RS16405LKD46_RS16410
Partner old locus tags
LKD46_16475LKD46_16480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_059085412.1Primary protein accession used for annex mappings.
UniProt accessionA0A367FTD8Primary UniProt accession resolved in the annex database.
UniProt IDA0A367FTD8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS16405Primary locus identifier stored in the genes table.
Old locus tagLKD46_16475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000032.1Sequence record reported by the local genomic context database.
Genomic interval8 417-9 955 nt1 539 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 417-11 633 ntGCF_020686995::NZ_JAJEPT010000032.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000032.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000032.1All displayed genes belong to this local TCS context.
Neighborhood span8 417-11 633 nt3 217 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 417 nt11 633 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS16405GCF_020686995#LKD46_RS16405
RRunclassifiedCurrent focus
8 417-9 955 nt · Forward (+)
LKD46_RS16410GCF_020686995#LKD46_RS16410
HKClassic
9 930-11 633 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001487165#BN3261_RS02855Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0143305
Simplified PFAM architecture for RROC_0143305
PFAM domain coverage: 191 / 512 aa (37.3%)
1 aa512 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[422-500]
- Domain count: 2
- Matched identifier: RROC_0143305
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 422-500 ; HTH_18 422-500
Cluster members and taxonomy
Representative gene: GCF_001487165#BN3261_RS02855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key