1 Response_reg#1
2-114 aa · 113 aa · 50.4% of protein
Raw token
Response_reg:2:1.46e-31:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS15640
Response regulator OmpR family
Blautia fusiformis · GCF_020686995
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS15640Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 224 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:147:1.92e-34:220:77:77- Raw architecture: Response_reg:2:1.46e-31:114:113:111#Trans_reg_C:147:1.92e-34:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000025.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13799-15825Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_15705RefSeq proteinWP_118368681.1
Context group ID
GCF_020686995::NZ_JAJEPT010000025.1::G00029Context members
LKD46_RS15635LKD46_RS15640
Partner locus tags
LKD46_RS15635LKD46_RS15640
Partner old locus tags
LKD46_15700LKD46_15705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118368681.1Primary protein accession used for annex mappings.
UniProt accessionA0A564W730Primary UniProt accession resolved in the annex database.
UniProt IDA0A564W730_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS15640Primary locus identifier stored in the genes table.
Old locus tagLKD46_15705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000025.1Sequence record reported by the local genomic context database.
Genomic interval15 151-15 825 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 799-15 825 ntGCF_020686995::NZ_JAJEPT010000025.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000025.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000025.1All displayed genes belong to this local TCS context.
Neighborhood span13 799-15 825 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 799 nt15 825 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS15635GCF_020686995#LKD46_RS15635
HKClassic
13 799-15 154 nt · Reverse (-)
LKD46_RS15640GCF_020686995#LKD46_RS15640
RROmpRCurrent focus
15 151-15 825 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480785#DW694_RS11580Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1543516
Simplified PFAM architecture for RROC_1543516
PFAM domain coverage: 185 / 224 aa (82.6%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-113] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1543516
- Positioned domains: Response_reg 2-113 ; Response_reg 2-113 ; Trans_reg_C 148-220 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_003480785#DW694_RS11580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key