1 HAMP#1
72-141 aa · 70 aa · 18.2% of protein
Raw token
HAMP:72:0.0000000000000816:141:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS14560
Histidine kinase, Classic
Blautia fusiformis · GCF_020686995
ClassHKTypeClassicLength385 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS14560Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length385 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 385 aa (65.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa385 aa
Domain-by-domain annotation3 items
2 HisKA#2
152-219 aa · 68 aa · 17.7% of protein
Raw token
HisKA:152:0.0000000000000101:219:68:643 HATPase_c#3
266-379 aa · 114 aa · 29.6% of protein
Raw token
HATPase_c:266:5.39e-32:379:114:109- Raw architecture: HAMP:72:0.0000000000000816:141:70:69#HisKA:152:0.0000000000000101:219:68:64#HATPase_c:266:5.39e-32:379:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000020.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14675-16514Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_14615RefSeq proteinWP_227574294.1
Context group ID
GCF_020686995::NZ_JAJEPT010000020.1::G00027Context members
LKD46_RS14560LKD46_RS14565
Partner locus tags
LKD46_RS14560LKD46_RS14565
Partner old locus tags
LKD46_14615LKD46_14620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227574294.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS14560Primary locus identifier stored in the genes table.
Old locus tagLKD46_14615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000020.1Sequence record reported by the local genomic context database.
Genomic interval14 675-15 832 nt1 158 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 675-16 514 ntGCF_020686995::NZ_JAJEPT010000020.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000020.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000020.1All displayed genes belong to this local TCS context.
Neighborhood span14 675-16 514 nt1 840 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 675 nt16 514 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS14560GCF_020686995#LKD46_RS14560
HKClassicCurrent focus
14 675-15 832 nt · Forward (+)
LKD46_RS14565GCF_020686995#LKD46_RS14565
RROmpR
15 825-16 514 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020686995#LKD46_RS14560The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2568443
Simplified PFAM architecture for HKOC_2568443
PFAM domain coverage: 230 / 385 aa (59.7%)
1 aa385 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[89-141] | HisKA[153-218] | HATPase_c[267-377]
- Domain count: 3
- Matched identifier: HKOC_2568443
- Positioned domains: HAMP 89-141 ; HisKA 153-218 ; HATPase_c 267-377
Cluster members and taxonomy
Representative gene: GCF_020686995#LKD46_RS14560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key