1 Response_reg#1
4-116 aa · 113 aa · 54.3% of protein
Raw token
Response_reg:4:0.00000000000188:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS14490
Response regulator NarL family
Blautia fusiformis · GCF_020686995
ClassRRTypeNarLLength208 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020686995#LKD46_RS14490Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length208 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 208 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa208 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
144-197 aa · 54 aa · 26.0% of protein
Raw token
HTH_LUXR:144:0.000000232:197:54:58- Raw architecture: Response_reg:4:0.00000000000188:116:113:111#HTH_LUXR:144:0.000000232:197:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020686995::NZ_JAJEPT010000019.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span60080-60706Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_14540RefSeq proteinWP_022426201.1
Context group ID
GCF_020686995::NZ_JAJEPT010000019.1::G00015Context members
LKD46_RS14490
Partner locus tags
LKD46_RS14490
Partner old locus tags
LKD46_14540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022426201.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WBF0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WBF0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS14490Primary locus identifier stored in the genes table.
Old locus tagLKD46_14540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000019.1Sequence record reported by the local genomic context database.
Genomic interval60 080-60 706 nt627 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 080-60 706 ntGCF_020686995::NZ_JAJEPT010000019.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000019.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000019.1All displayed genes belong to this local TCS context.
Neighborhood span60 080-60 706 nt627 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 080 nt60 706 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LKD46_RS14490GCF_020686995#LKD46_RS14490
RRNarLCurrent focus
60 080-60 706 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS10315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_2057113
Simplified PFAM architecture for RROC_2057113
PFAM domain coverage: 145 / 208 aa (69.7%)
1 aa208 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[4-116] | Sigma70_r4_2[144-175]
- Domain count: 2
- Matched identifier: RROC_2057113
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; Sigma70_r4_2 144-175 ; Sigma70_r4_2 144-175
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS10315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key