1 sCache_like#1
40-131 aa · 92 aa · 16.4% of protein
Raw token
sCache_like:40:0.0000000443:131:99:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS14200
Histidine kinase, Classic
Blautia fusiformis · GCF_020686995
ClassHKTypeClassicLength560 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020686995#LKD46_RS14200Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length560 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage271 / 560 aa (48.4%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa560 aa
Domain-by-domain annotation3 items
2 HisKA#2
332-397 aa · 66 aa · 11.8% of protein
Raw token
HisKA:332:1.52e-18:397:66:643 HATPase_c#3
441-553 aa · 113 aa · 20.2% of protein
Raw token
HATPase_c:441:5.89e-32:553:113:109- Raw architecture: sCache_like:40:0.0000000443:131:99:114#HisKA:332:1.52e-18:397:66:64#HATPase_c:441:5.89e-32:553:113:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020686995::NZ_JAJEPT010000018.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span59935-61617Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_14250RefSeq proteinWP_331465979.1
Context group ID
GCF_020686995::NZ_JAJEPT010000018.1::G00014Context members
LKD46_RS14200
Partner locus tags
LKD46_RS14200
Partner old locus tags
LKD46_14250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_331465979.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS14200Primary locus identifier stored in the genes table.
Old locus tagLKD46_14250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000018.1Sequence record reported by the local genomic context database.
Genomic interval59 935-61 617 nt1 683 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 935-61 617 ntGCF_020686995::NZ_JAJEPT010000018.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000018.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000018.1All displayed genes belong to this local TCS context.
Neighborhood span59 935-61 617 nt1 683 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 935 nt61 617 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LKD46_RS14200GCF_020686995#LKD46_RS14200
HKClassicCurrent focus
59 935-61 617 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020686995#LKD46_RS14200The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1259647
Simplified PFAM architecture for HKOC_1259647
PFAM domain coverage: 175 / 560 aa (31.3%)
1 aa560 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[332-397] | HATPase_c[444-552]
- Domain count: 2
- Matched identifier: HKOC_1259647
- Positioned domains: HisKA 332-397 ; HATPase_c 444-552
Cluster members and taxonomy
Representative gene: GCF_020686995#LKD46_RS14200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key