1 dCache_1#1
47-289 aa · 243 aa · 40.4% of protein
Raw token
dCache_1:47:0.0000000000316:289:243:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS14040
Histidine kinase, Classic
Blautia fusiformis · GCF_020686995
ClassHKTypeClassicLength601 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS14040Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length601 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage491 / 601 aa (81.7%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa601 aa
Domain-by-domain annotation4 items
2 HAMP#2
308-377 aa · 70 aa · 11.6% of protein
Raw token
HAMP:308:0.0000000000903:377:70:693 His_kinase#3
392-469 aa · 78 aa · 13.0% of protein
Raw token
His_kinase:392:8.96e-31:469:78:804 HATPase_c#4
493-592 aa · 100 aa · 16.6% of protein
Raw token
HATPase_c:493:0.0000000000000122:592:104:109- Raw architecture: dCache_1:47:0.0000000000316:289:243:195#HAMP:308:0.0000000000903:377:70:69#His_kinase:392:8.96e-31:469:78:80#HATPase_c:493:0.0000000000000122:592:104:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000018.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19598-23012Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_14090RefSeq proteinWP_227574269.1
Context group ID
GCF_020686995::NZ_JAJEPT010000018.1::G00012Context members
LKD46_RS16695LKD46_RS14040
Partner locus tags
LKD46_RS16695LKD46_RS14040
Partner old locus tags
LKD46_14085LKD46_14090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227574269.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS14040Primary locus identifier stored in the genes table.
Old locus tagLKD46_14090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000018.1Sequence record reported by the local genomic context database.
Genomic interval21 207-23 012 nt1 806 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 598-23 012 ntGCF_020686995::NZ_JAJEPT010000018.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000018.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000018.1All displayed genes belong to this local TCS context.
Neighborhood span19 598-23 012 nt3 415 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 598 nt23 012 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS16695GCF_020686995#LKD46_RS16695
RRunclassified
19 598-21 205 nt · Reverse (-)
LKD46_RS14040GCF_020686995#LKD46_RS14040
HKClassicCurrent focus
21 207-23 012 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020686995#LKD46_RS14040The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1050048
Simplified PFAM architecture for HKOC_1050048
PFAM domain coverage: 229 / 601 aa (38.1%)
1 aa601 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[328-376] | His_kinase[392-469] | HATPase_c[493-594]
- Domain count: 3
- Matched identifier: HKOC_1050048
- Positioned domains: HAMP 328-376 ; His_kinase 392-469 ; HATPase_c 493-594
Cluster members and taxonomy
Representative gene: GCF_020686995#LKD46_RS14040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key