1 HAMP#1
138-204 aa · 67 aa · 15.2% of protein
Raw token
HAMP:138:0.000000116:204:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS13830
Histidine kinase, Classic
Blautia fusiformis · GCF_020686995
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS13830Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 440 aa (54.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation3 items
2 HisKA#2
219-288 aa · 70 aa · 15.9% of protein
Raw token
HisKA:219:0.00000000175:288:70:643 HATPase_c#3
334-435 aa · 102 aa · 23.2% of protein
Raw token
HATPase_c:334:3.69e-23:435:103:109- Raw architecture: HAMP:138:0.000000116:204:67:69#HisKA:219:0.00000000175:288:70:64#HATPase_c:334:3.69e-23:435:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000017.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46346-48330Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_13880RefSeq proteinWP_227574250.1
Context group ID
GCF_020686995::NZ_JAJEPT010000017.1::G00011Context members
LKD46_RS13825LKD46_RS13830
Partner locus tags
LKD46_RS13825LKD46_RS13830
Partner old locus tags
LKD46_13875LKD46_13880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227574250.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS13830Primary locus identifier stored in the genes table.
Old locus tagLKD46_13880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000017.1Sequence record reported by the local genomic context database.
Genomic interval47 008-48 330 nt1 323 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 346-48 330 ntGCF_020686995::NZ_JAJEPT010000017.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000017.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000017.1All displayed genes belong to this local TCS context.
Neighborhood span46 346-48 330 nt1 985 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 346 nt48 330 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS13825GCF_020686995#LKD46_RS13825
RROmpR
46 346-47 020 nt · Forward (+)
LKD46_RS13830GCF_020686995#LKD46_RS13830
HKClassicCurrent focus
47 008-48 330 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020686995#LKD46_RS13830The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2076926
Simplified PFAM architecture for HKOC_2076926
PFAM domain coverage: 216 / 440 aa (49.1%)
1 aa440 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[159-204] | HisKA[220-287] | HATPase_c[334-435]
- Domain count: 3
- Matched identifier: HKOC_2076926
- Positioned domains: HAMP 159-204 ; HisKA 220-287 ; HATPase_c 334-435
Cluster members and taxonomy
Representative gene: GCF_020686995#LKD46_RS13830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key