1 HisKA_3#1
192-256 aa · 65 aa · 16.5% of protein
Raw token
HisKA_3:192:0.0000000000000396:256:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS13125
Histidine kinase, Classic
Blautia fusiformis · GCF_020686995
ClassHKTypeClassicLength393 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS13125Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length393 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 393 aa (41.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa393 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
293-388 aa · 96 aa · 24.4% of protein
Raw token
HATPase_c:293:0.0000000000000562:388:101:109- Raw architecture: HisKA_3:192:0.0000000000000396:256:67:68#HATPase_c:293:0.0000000000000562:388:101:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000015.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96837-98772Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_13160RefSeq proteinWP_110103458.1
Context group ID
GCF_020686995::NZ_JAJEPT010000015.1::G00010Context members
LKD46_RS13125LKD46_RS13130
Partner locus tags
LKD46_RS13125LKD46_RS13130
Partner old locus tags
LKD46_13160LKD46_13165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_110103458.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS13125Primary locus identifier stored in the genes table.
Old locus tagLKD46_13160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000015.1Sequence record reported by the local genomic context database.
Genomic interval96 837-98 018 nt1 182 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 837-98 772 ntGCF_020686995::NZ_JAJEPT010000015.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000015.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000015.1All displayed genes belong to this local TCS context.
Neighborhood span96 837-98 772 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 837 nt98 772 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS13125GCF_020686995#LKD46_RS13125
HKClassicCurrent focus
96 837-98 018 nt · Forward (+)
LKD46_RS13130GCF_020686995#LKD46_RS13130
RRNarL
98 152-98 772 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003184505#DMI82_RS12240Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2504821
Simplified PFAM architecture for HKOC_2504821
PFAM domain coverage: 161 / 393 aa (41.0%)
1 aa393 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[192-255] | HATPase_c[293-389]
- Domain count: 2
- Matched identifier: HKOC_2504821
- Positioned domains: HisKA_3 192-255 ; HATPase_c 293-389
Cluster members and taxonomy
Representative gene: GCF_003184505#DMI82_RS12240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key