1 HAMP#1
174-241 aa · 68 aa · 14.5% of protein
Raw token
HAMP:174:0.00000000000287:241:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS12855
Histidine kinase, Classic
Blautia fusiformis · GCF_020686995
ClassHKTypeClassicLength469 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS12855Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length469 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 469 aa (51.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa469 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-309 aa · 64 aa · 13.6% of protein
Raw token
HisKA:246:0.00000000000000136:309:64:643 HATPase_c#3
357-465 aa · 109 aa · 23.2% of protein
Raw token
HATPase_c:357:1.38e-27:465:109:109- Raw architecture: HAMP:174:0.00000000000287:241:70:69#HisKA:246:0.00000000000000136:309:64:64#HATPase_c:357:1.38e-27:465:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000015.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41664-43771Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_12890RefSeq proteinWP_110103446.1
Context group ID
GCF_020686995::NZ_JAJEPT010000015.1::G00009Context members
LKD46_RS12850LKD46_RS12855
Partner locus tags
LKD46_RS12850LKD46_RS12855
Partner old locus tags
LKD46_12885LKD46_12890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_110103446.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS12855Primary locus identifier stored in the genes table.
Old locus tagLKD46_12890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000015.1Sequence record reported by the local genomic context database.
Genomic interval42 362-43 771 nt1 410 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 664-43 771 ntGCF_020686995::NZ_JAJEPT010000015.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000015.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000015.1All displayed genes belong to this local TCS context.
Neighborhood span41 664-43 771 nt2 108 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 664 nt43 771 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS12850GCF_020686995#LKD46_RS12850
RROmpR
41 664-42 365 nt · Forward (+)
LKD46_RS12855GCF_020686995#LKD46_RS12855
HKClassicCurrent focus
42 362-43 771 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003184505#DMI82_RS11970Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1729290
Simplified PFAM architecture for HKOC_1729290
PFAM domain coverage: 222 / 469 aa (47.3%)
1 aa469 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[193-240] | HisKA[246-309] | HATPase_c[358-467]
- Domain count: 3
- Matched identifier: HKOC_1729290
- Positioned domains: HAMP 193-240 ; HisKA 246-309 ; HATPase_c 358-467
Cluster members and taxonomy
Representative gene: GCF_003184505#DMI82_RS11970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key