1 HAMP#1
287-356 aa · 70 aa · 12.0% of protein
Raw token
HAMP:287:0.000052:356:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS10120
Histidine kinase, Classic
Blautia fusiformis · GCF_020686995
ClassHKTypeClassicLength581 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS10120Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length581 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 581 aa (43.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa581 aa
Domain-by-domain annotation3 items
2 His_kinase#2
371-449 aa · 79 aa · 13.6% of protein
Raw token
His_kinase:371:4.69e-28:449:80:803 HATPase_c#3
466-571 aa · 106 aa · 18.2% of protein
Raw token
HATPase_c:466:0.000083:571:119:109- Raw architecture: HAMP:287:0.000052:356:70:69#His_kinase:371:4.69e-28:449:80:80#HATPase_c:466:0.000083:571:119:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000010.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span112455-115768Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_10155RefSeq proteinWP_092070120.1
Context group ID
GCF_020686995::NZ_JAJEPT010000010.1::G00002Context members
LKD46_RS10115LKD46_RS10120
Partner locus tags
LKD46_RS10115LKD46_RS10120
Partner old locus tags
LKD46_10150LKD46_10155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_092070120.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW5CSP3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW5CSP3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS10120Primary locus identifier stored in the genes table.
Old locus tagLKD46_10155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000010.1Sequence record reported by the local genomic context database.
Genomic interval114 023-115 768 nt1 746 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span112 455-115 768 ntGCF_020686995::NZ_JAJEPT010000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000010.1All displayed genes belong to this local TCS context.
Neighborhood span112 455-115 768 nt3 314 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
112 455 nt115 768 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS10115GCF_020686995#LKD46_RS10115
RRunclassified
112 455-114 026 nt · Reverse (-)
LKD46_RS10120GCF_020686995#LKD46_RS10120
HKClassicCurrent focus
114 023-115 768 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS08925Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1156652
Simplified PFAM architecture for HKOC_1156652
PFAM domain coverage: 79 / 581 aa (13.6%)
1 aa581 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[371-449]
- Domain count: 1
- Matched identifier: HKOC_1156652
- Positioned domains: His_kinase 371-449
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS08925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key