1 Response_reg#1
4-118 aa · 115 aa · 30.4% of protein
Raw token
Response_reg:4:5.46e-19:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS09075
Response regulator, unclassified
Blautia fusiformis · GCF_020686995
ClassRRTypeunclassifiedLength378 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020686995#LKD46_RS09075Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length378 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage200 / 378 aa (52.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa378 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
284-325 aa · 42 aa · 11.1% of protein
Raw token
HTH_AraC:284:0.000000000109:325:42:423 HTH_AraC#3
333-375 aa · 43 aa · 11.4% of protein
Raw token
HTH_AraC:333:0.0000351:375:43:42- Raw architecture: Response_reg:4:5.46e-19:118:115:111#HTH_AraC:284:0.000000000109:325:42:42#HTH_AraC:333:0.0000351:375:43:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020686995::NZ_JAJEPT010000009.1::G00050
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span35613-36749Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_09110RefSeq proteinWP_059085748.1
Context group ID
GCF_020686995::NZ_JAJEPT010000009.1::G00050Context members
LKD46_RS09075
Partner locus tags
LKD46_RS09075
Partner old locus tags
LKD46_09110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_059085748.1Primary protein accession used for annex mappings.
UniProt accessionA0A367FWN0Primary UniProt accession resolved in the annex database.
UniProt IDA0A367FWN0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS09075Primary locus identifier stored in the genes table.
Old locus tagLKD46_09110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000009.1Sequence record reported by the local genomic context database.
Genomic interval35 613-36 749 nt1 137 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span35 613-36 749 ntGCF_020686995::NZ_JAJEPT010000009.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000009.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000009.1All displayed genes belong to this local TCS context.
Neighborhood span35 613-36 749 nt1 137 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 613 nt36 749 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LKD46_RS09075GCF_020686995#LKD46_RS09075
RRunclassifiedCurrent focus
35 613-36 749 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001487165#BN3261_RS06185Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0426744
Simplified PFAM architecture for RROC_0426744
PFAM domain coverage: 191 / 378 aa (50.5%)
1 aa378 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[298-375]
- Domain count: 2
- Matched identifier: RROC_0426744
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 298-375 ; HTH_18 298-375
Cluster members and taxonomy
Representative gene: GCF_001487165#BN3261_RS06185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key