1 Response_reg#1
129-245 aa · 117 aa · 46.6% of protein
Raw token
Response_reg:129:2.42e-29:245:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS08995
Response regulator, unclassified
Blautia fusiformis · GCF_020686995
ClassRRTypeunclassifiedLength251 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020686995#LKD46_RS08995Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length251 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage117 / 251 aa (46.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa251 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:129:2.42e-29:245:117:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020686995::NZ_JAJEPT010000009.1::G00049
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span16924-17679Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_09030RefSeq proteinWP_227574041.1
Context group ID
GCF_020686995::NZ_JAJEPT010000009.1::G00049Context members
LKD46_RS08995
Partner locus tags
LKD46_RS08995
Partner old locus tags
LKD46_09030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227574041.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS08995Primary locus identifier stored in the genes table.
Old locus tagLKD46_09030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000009.1Sequence record reported by the local genomic context database.
Genomic interval16 924-17 679 nt756 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 924-17 679 ntGCF_020686995::NZ_JAJEPT010000009.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000009.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000009.1All displayed genes belong to this local TCS context.
Neighborhood span16 924-17 679 nt756 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 924 nt17 679 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LKD46_RS08995GCF_020686995#LKD46_RS08995
RRunclassifiedCurrent focus
16 924-17 679 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020686995#LKD46_RS08995The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0716437
Simplified PFAM architecture for RROC_0716437
PFAM domain coverage: 222 / 251 aa (88.4%)
1 aa251 aa
HATPase_cResponse_reg
- Simplified architecture: HATPase_c + Response_reg
- Raw architecture: HATPase_c[2-106] | Response_reg[129-245]
- Domain count: 2
- Matched identifier: RROC_0716437
- Positioned domains: HATPase_c 2-106 ; Response_reg 129-245
Cluster members and taxonomy
Representative gene: GCF_020686995#LKD46_RS08995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key