1 HAMP#1
83-150 aa · 68 aa · 18.0% of protein
Raw token
HAMP:83:0.0000000123:150:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS08975
Histidine kinase, Classic
Blautia fusiformis · GCF_020686995
ClassHKTypeClassicLength378 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS08975Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length378 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 378 aa (61.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa378 aa
Domain-by-domain annotation3 items
2 HisKA#2
162-222 aa · 61 aa · 16.1% of protein
Raw token
HisKA:162:0.0000000000186:222:61:643 HATPase_c#3
275-377 aa · 103 aa · 27.2% of protein
Raw token
HATPase_c:275:3.39e-26:377:106:109- Raw architecture: HAMP:83:0.0000000123:150:68:69#HisKA:162:0.0000000000186:222:61:64#HATPase_c:275:3.39e-26:377:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000009.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11779-13862Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_09010RefSeq proteinWP_227574039.1
Context group ID
GCF_020686995::NZ_JAJEPT010000009.1::G00048Context members
LKD46_RS08975LKD46_RS08980
Partner locus tags
LKD46_RS08975LKD46_RS08980
Partner old locus tags
LKD46_09010LKD46_09015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227574039.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS08975Primary locus identifier stored in the genes table.
Old locus tagLKD46_09010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000009.1Sequence record reported by the local genomic context database.
Genomic interval11 779-12 915 nt1 137 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 779-13 862 ntGCF_020686995::NZ_JAJEPT010000009.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000009.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000009.1All displayed genes belong to this local TCS context.
Neighborhood span11 779-13 862 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 779 nt13 862 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS08975GCF_020686995#LKD46_RS08975
HKClassicCurrent focus
11 779-12 915 nt · Reverse (-)
LKD46_RS08980GCF_020686995#LKD46_RS08980
RROmpR
13 197-13 862 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_958347175#Q4H63_RS13050Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1696363
Simplified PFAM architecture for HKOC_1696363
PFAM domain coverage: 163 / 473 aa (34.5%)
1 aa473 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[257-316] | HATPase_c[370-472]
- Domain count: 2
- Matched identifier: HKOC_1696363
- Positioned domains: HisKA 257-316 ; HATPase_c 370-472
Cluster members and taxonomy
Representative gene: GCF_958347175#Q4H63_RS13050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key