1 Response_reg#1
3-117 aa · 115 aa · 47.5% of protein
Raw token
Response_reg:3:1.06e-22:117:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS06065
Response regulator LytTR family
Blautia fusiformis · GCF_020686995
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020686995#LKD46_RS06065Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage204 / 242 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-227 aa · 89 aa · 36.8% of protein
Raw token
LytTR:139:0.000000000187:227:94:98- Raw architecture: Response_reg:3:1.06e-22:117:117:111#LytTR:139:0.000000000187:227:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020686995::NZ_JAJEPT010000005.1::G00044
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span81381-82109Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_06080RefSeq proteinWP_110103258.1
Context group ID
GCF_020686995::NZ_JAJEPT010000005.1::G00044Context members
LKD46_RS06065
Partner locus tags
LKD46_RS06065
Partner old locus tags
LKD46_06080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_110103258.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS06065Primary locus identifier stored in the genes table.
Old locus tagLKD46_06080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000005.1Sequence record reported by the local genomic context database.
Genomic interval81 381-82 109 nt729 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 381-82 109 ntGCF_020686995::NZ_JAJEPT010000005.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000005.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000005.1All displayed genes belong to this local TCS context.
Neighborhood span81 381-82 109 nt729 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 381 nt82 109 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LKD46_RS06065GCF_020686995#LKD46_RS06065
RRLytTRCurrent focus
81 381-82 109 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003184505#DMI82_RS10465Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0848166
Simplified PFAM architecture for RROC_0848166
PFAM domain coverage: 201 / 242 aa (83.1%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-116] | LytTR[139-225]
- Domain count: 2
- Matched identifier: RROC_0848166
- Positioned domains: Response_reg 3-116 ; Response_reg 3-116 ; LytTR 139-225 ; LytTR 139-225
Cluster members and taxonomy
Representative gene: GCF_003184505#DMI82_RS10465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key