1 SBP_bac_3#1
57-274 aa · 218 aa · 23.1% of protein
Raw token
SBP_bac_3:57:2.03e-25:274:235:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS05480
Histidine kinase, Hybrid
Blautia fusiformis · GCF_020686995
ClassHKTypeHybridLength943 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_020686995#LKD46_RS05480Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length943 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage718 / 943 aa (76.1%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa943 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
296-493 aa · 198 aa · 21.0% of protein
Raw token
SBP_bac_3:296:2.67e-21:493:211:2243 HisKA#3
567-632 aa · 66 aa · 7.0% of protein
Raw token
HisKA:567:4.57e-18:632:66:644 HATPase_c#4
680-797 aa · 118 aa · 12.5% of protein
Raw token
HATPase_c:680:1.21e-28:797:119:1095 Response_reg#5
820-937 aa · 118 aa · 12.5% of protein
Raw token
Response_reg:820:1.06e-31:937:118:111- Raw architecture: SBP_bac_3:57:2.03e-25:274:235:224#SBP_bac_3:296:2.67e-21:493:211:224#HisKA:567:4.57e-18:632:66:64#HATPase_c:680:1.21e-28:797:119:109#Response_reg:820:1.06e-31:937:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_020686995::NZ_JAJEPT010000004.1::G00043
Group size44 locus tags listed below.
HK / RR3 / 1Counts resolved for the local TCS neighborhood.
Context span191322-201589Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_05495RefSeq proteinWP_110101988.1
Context group ID
GCF_020686995::NZ_JAJEPT010000004.1::G00043Context members
LKD46_RS05455LKD46_RS05465LKD46_RS05475LKD46_RS05480
Partner locus tags
LKD46_RS05455LKD46_RS05465LKD46_RS05475LKD46_RS05480
Partner old locus tags
LKD46_05470LKD46_05480LKD46_05490LKD46_05495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_110101988.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS05480Primary locus identifier stored in the genes table.
Old locus tagLKD46_05495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000004.1Sequence record reported by the local genomic context database.
Genomic interval198 758-201 589 nt2 832 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span191 322-201 589 ntGCF_020686995::NZ_JAJEPT010000004.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000004.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000004.1All displayed genes belong to this local TCS context.
Neighborhood span191 322-201 589 nt10 268 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
191 322 nt201 589 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
LKD46_RS05455GCF_020686995#LKD46_RS05455
HKHybrid
191 322-193 508 nt · Forward (+)
LKD46_RS05465GCF_020686995#LKD46_RS05465
RRRpfG
193 977-195 476 nt · Forward (+)
LKD46_RS05475GCF_020686995#LKD46_RS05475
HKHybrid
195 724-198 579 nt · Forward (+)
LKD46_RS05480GCF_020686995#LKD46_RS05480
HKHybridCurrent focus
198 758-201 589 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003184505#DMI82_RS00215Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0337134
Simplified PFAM architecture for HKOC_0337134
PFAM domain coverage: 487 / 943 aa (51.6%)
1 aa943 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[75-261] | HisKA[567-632] | HATPase_c[680-795] | Response_reg[820-937]
- Domain count: 4
- Matched identifier: HKOC_0337134
- Positioned domains: SBP_bac_3 75-261 ; HisKA 567-632 ; HATPase_c 680-795 ; Response_reg 820-937
Cluster members and taxonomy
Representative gene: GCF_003184505#DMI82_RS00215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key