1 Response_reg#1
7-110 aa · 104 aa · 20.8% of protein
Raw token
Response_reg:7:1.73e-27:110:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS05465
Response regulator RpfG family
Blautia fusiformis · GCF_020686995
ClassRRTypeRpfGLength499 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_020686995#LKD46_RS05465Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length499 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 499 aa (42.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa499 aa
Domain-by-domain annotation2 items
2 HD#2
193-299 aa · 107 aa · 21.4% of protein
Raw token
HD:193:0.0000000000000258:299:107:110- Raw architecture: Response_reg:7:1.73e-27:110:105:111#HD:193:0.0000000000000258:299:107:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_020686995::NZ_JAJEPT010000004.1::G00043
Group size44 locus tags listed below.
HK / RR3 / 1Counts resolved for the local TCS neighborhood.
Context span191322-201589Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_05480RefSeq proteinWP_110101990.1
Context group ID
GCF_020686995::NZ_JAJEPT010000004.1::G00043Context members
LKD46_RS05455LKD46_RS05465LKD46_RS05475LKD46_RS05480
Partner locus tags
LKD46_RS05455LKD46_RS05465LKD46_RS05475LKD46_RS05480
Partner old locus tags
LKD46_05470LKD46_05480LKD46_05490LKD46_05495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_110101990.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS05465Primary locus identifier stored in the genes table.
Old locus tagLKD46_05480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000004.1Sequence record reported by the local genomic context database.
Genomic interval193 977-195 476 nt1 500 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span191 322-201 589 ntGCF_020686995::NZ_JAJEPT010000004.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000004.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000004.1All displayed genes belong to this local TCS context.
Neighborhood span191 322-201 589 nt10 268 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
191 322 nt201 589 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
LKD46_RS05455GCF_020686995#LKD46_RS05455
HKHybrid
191 322-193 508 nt · Forward (+)
LKD46_RS05465GCF_020686995#LKD46_RS05465
RRRpfGCurrent focus
193 977-195 476 nt · Forward (+)
LKD46_RS05475GCF_020686995#LKD46_RS05475
HKHybrid
195 724-198 579 nt · Forward (+)
LKD46_RS05480GCF_020686995#LKD46_RS05480
HKHybrid
198 758-201 589 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003184505#DMI82_RS00230Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0159193
Simplified PFAM architecture for RROC_0159193
PFAM domain coverage: 254 / 499 aa (50.9%)
1 aa499 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[7-117] | HD_5[178-320]
- Domain count: 2
- Matched identifier: RROC_0159193
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; HD_5 178-320 ; HD_5 178-320
Cluster members and taxonomy
Representative gene: GCF_003184505#DMI82_RS00230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key