1 HisKA#1
345-411 aa · 67 aa · 9.2% of protein
Raw token
HisKA:345:7.16e-16:411:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS05455
Histidine kinase, Hybrid
Blautia fusiformis · GCF_020686995
ClassHKTypeHybridLength728 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_020686995#LKD46_RS05455Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length728 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage298 / 728 aa (40.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa728 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
463-576 aa · 114 aa · 15.7% of protein
Raw token
HATPase_c:463:2.12e-25:576:114:1093 Response_reg#3
599-715 aa · 117 aa · 16.1% of protein
Raw token
Response_reg:599:1.55e-30:715:117:111- Raw architecture: HisKA:345:7.16e-16:411:67:64#HATPase_c:463:2.12e-25:576:114:109#Response_reg:599:1.55e-30:715:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_020686995::NZ_JAJEPT010000004.1::G00043
Group size44 locus tags listed below.
HK / RR3 / 1Counts resolved for the local TCS neighborhood.
Context span191322-201589Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_05470RefSeq proteinWP_110101991.1
Context group ID
GCF_020686995::NZ_JAJEPT010000004.1::G00043Context members
LKD46_RS05455LKD46_RS05465LKD46_RS05475LKD46_RS05480
Partner locus tags
LKD46_RS05455LKD46_RS05465LKD46_RS05475LKD46_RS05480
Partner old locus tags
LKD46_05470LKD46_05480LKD46_05490LKD46_05495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_110101991.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS05455Primary locus identifier stored in the genes table.
Old locus tagLKD46_05470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000004.1Sequence record reported by the local genomic context database.
Genomic interval191 322-193 508 nt2 187 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span191 322-201 589 ntGCF_020686995::NZ_JAJEPT010000004.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000004.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000004.1All displayed genes belong to this local TCS context.
Neighborhood span191 322-201 589 nt10 268 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
191 322 nt201 589 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
LKD46_RS05455GCF_020686995#LKD46_RS05455
HKHybridCurrent focus
191 322-193 508 nt · Forward (+)
LKD46_RS05465GCF_020686995#LKD46_RS05465
RRRpfG
193 977-195 476 nt · Forward (+)
LKD46_RS05475GCF_020686995#LKD46_RS05475
HKHybrid
195 724-198 579 nt · Forward (+)
LKD46_RS05480GCF_020686995#LKD46_RS05480
HKHybrid
198 758-201 589 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003184505#DMI82_RS00240Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0717189
Simplified PFAM architecture for HKOC_0717189
PFAM domain coverage: 297 / 728 aa (40.8%)
1 aa728 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[345-411] | HATPase_c[463-575] | Response_reg[599-715]
- Domain count: 3
- Matched identifier: HKOC_0717189
- Positioned domains: HisKA 345-411 ; HATPase_c 463-575 ; Response_reg 599-715
Cluster members and taxonomy
Representative gene: GCF_003184505#DMI82_RS00240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key