1 Response_reg#1
6-115 aa · 110 aa · 44.0% of protein
Raw token
Response_reg:6:1.78e-38:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS04170
Response regulator OmpR family
Blautia fusiformis · GCF_020686995
ClassRRTypeOmpRLength250 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS04170Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 250 aa (74.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa250 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 30.8% of protein
Raw token
Trans_reg_C:153:1.97e-23:229:77:77- Raw architecture: Response_reg:6:1.78e-38:115:111:111#Trans_reg_C:153:1.97e-23:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000003.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span135011-137339Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_04180RefSeq proteinWP_227573839.1
Context group ID
GCF_020686995::NZ_JAJEPT010000003.1::G00040Context members
LKD46_RS04165LKD46_RS04170
Partner locus tags
LKD46_RS04165LKD46_RS04170
Partner old locus tags
LKD46_04175LKD46_04180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227573839.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS04170Primary locus identifier stored in the genes table.
Old locus tagLKD46_04180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000003.1Sequence record reported by the local genomic context database.
Genomic interval136 587-137 339 nt753 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span135 011-137 339 ntGCF_020686995::NZ_JAJEPT010000003.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000003.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000003.1All displayed genes belong to this local TCS context.
Neighborhood span135 011-137 339 nt2 329 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
135 011 nt137 339 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS04165GCF_020686995#LKD46_RS04165
HKClassic
135 011-136 594 nt · Forward (+)
LKD46_RS04170GCF_020686995#LKD46_RS04170
RROmpRCurrent focus
136 587-137 339 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020686995#LKD46_RS04170The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0726636
Simplified PFAM architecture for RROC_0726636
PFAM domain coverage: 186 / 250 aa (74.4%)
1 aa250 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0726636
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_020686995#LKD46_RS04170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key